Analysis of interatomic Contacts of Structural Units in PDB entry:
8BWL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BWL entry

There are 4 chains in PDB entry 8BWL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 397ARG 501
B
 ALA 398ARG 501
C
 GLY 25CYS 77
D
 GLY 25ASN 78
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 8BWL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
438 442Right-handed 310
Helix 2
AA2
A
444 457Right-handed alpha
Helix 3
AA3
B
410 413Right-handed 310
Helix 4
AA4
B
438 442Right-handed 310
Helix 5
AA5
B
444 457Right-handed alpha
Helix 6
AA6
C
27 41Right-handed alpha
Helix 7
AA7
C
55 64Right-handed alpha
Helix 8
AA8
C
66 71Right-handed alpha
Helix 9
AA9
C
72 75Right-handed 310
Helix 10
AB1
D
27 41Right-handed alpha
Helix 11
AB2
D
55 64Right-handed alpha
Helix 12
AB3
D
66 71Right-handed alpha
Helix 13
AB4
D
72 74Right-handed 310
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There are 6 sheets in PDB entry 8BWL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 403first strand
Strand 2
A
428 430anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
406 408first strand
Strand 2
A
423 425anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 420first strand
Strand 2
A
466 479anti-parallel
Strand 3
A
485 500anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 403first strand
Strand 2
B
428 430anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
406 408first strand
Strand 2
B
423 425anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
418 420first strand
Strand 2
B
466 479anti-parallel
Strand 3
B
485 500anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il