Analysis of interatomic Contacts of Structural Units in PDB entry:
8BWP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BWP entry

There is 1 chain in PDB entry 8BWP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 7LYS 1294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 59 helices in PDB entry 8BWP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 15Right-handed 310
Helix 2
AA2
A
17 22Right-handed alpha
Helix 3
AA3
A
24 26Right-handed 310
Helix 4
AA4
A
27 35Right-handed alpha
Helix 5
AA5
A
48 51Right-handed 310
Helix 6
AA6
A
52 75Right-handed alpha
Helix 7
AA7
A
79 87Right-handed alpha
Helix 8
AA8
A
88 121Right-handed alpha
Helix 9
AA9
A
127 150Right-handed alpha
Helix 10
AB1
A
150 181Right-handed alpha
Helix 11
AB2
A
182 189Right-handed alpha
Helix 12
AB3
A
190 200Right-handed alpha
Helix 13
AB4
A
201 203Right-handed 310
Helix 14
AB5
A
204 212Right-handed alpha
Helix 15
AB6
A
213 233Right-handed alpha
Helix 16
AB7
A
235 246Right-handed alpha
Helix 17
AB8
A
246 282Right-handed alpha
Helix 18
AB9
A
282 289Right-handed alpha
Helix 19
AC1
A
291 342Right-handed alpha
Helix 20
AC2
A
347 367Right-handed alpha
Helix 21
AC3
A
367 391Right-handed alpha
Helix 22
AC4
A
452 460Right-handed alpha
Helix 23
AC5
A
489 495Right-handed alpha
Helix 24
AC6
A
500 511Right-handed alpha
Helix 25
AC7
A
513 521Right-handed alpha
Helix 26
AC8
A
529 533Right-handed 310
Helix 27
AC9
A
536 551Right-handed alpha
Helix 28
AD1
A
567 576Right-handed alpha
Helix 29
AD2
A
593 600Right-handed 310
Helix 30
AD3
A
616 620Right-handed 310
Helix 31
AD4
A
697 709Right-handed alpha
Helix 32
AD5
A
710 745Right-handed alpha
Helix 33
AD6
A
760 808Right-handed alpha
Helix 34
AD7
A
809 816Right-handed alpha
Helix 35
AD8
A
817 827Right-handed alpha
Helix 36
AD9
A
827 835Right-handed alpha
Helix 37
AE1
A
835 861Right-handed alpha
Helix 38
AE2
A
864 896Right-handed alpha
Helix 39
AE3
A
897 909Right-handed alpha
Helix 40
AE4
A
910 917Right-handed alpha
Helix 41
AE5
A
919 970Right-handed alpha
Helix 42
AE6
A
975 987Right-handed alpha
Helix 43
AE7
A
988 1007Right-handed alpha
Helix 44
AE8
A
1007 1018Right-handed alpha
Helix 45
AE9
A
1082 1089Right-handed alpha
Helix 46
AF1
A
1109 1116Right-handed alpha
Helix 47
AF2
A
1130 1136Right-handed alpha
Helix 48
AF3
A
1142 1153Right-handed alpha
Helix 49
AF4
A
1155 1161Right-handed alpha
Helix 50
AF5
A
1164 1168Right-handed 310
Helix 51
AF6
A
1171 1175Right-handed 310
Helix 52
AF7
A
1178 1194Right-handed alpha
Helix 53
AF8
A
1203 1207Right-handed 310
Helix 54
AF9
A
1208 1223Right-handed alpha
Helix 55
AG1
A
1234 1238Right-handed 310
Helix 56
AG2
A
1257 1264Right-handed alpha
Helix 57
AG3
A
1267 1275Right-handed alpha
Helix 58
AG4
A
1276 1278Right-handed 310
Helix 59
AG5
A
1279 1294Right-handed alpha
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There are 5 sheets in PDB entry 8BWP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
428 435first strand
Strand 2
A
410 417anti-parallel
Strand 3
A
466 471anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
475 478first strand
Strand 2
A
555 558parallel
Strand 3
A
586 589parallel
Strand 4
A
441 444parallel
Strand 5
A
602 607parallel
Strand 6
A
610 613anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
487 488first strand
Strand 2
A
527 528anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1058 1065first strand
Strand 2
A
1041 1048anti-parallel
Strand 3
A
1095 1100anti-parallel
Strand 4
A
1103 1104anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1117 1120first strand
Strand 2
A
1197 1201parallel
Strand 3
A
1227 1231parallel
Strand 4
A
1070 1075parallel
Strand 5
A
1243 1248parallel
Strand 6
A
1251 1256anti-parallel
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