Analysis of interatomic Contacts of Structural Units in PDB entry:
8BWU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BWU entry

There is 1 chain in PDB entry 8BWU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 222THR 524
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 8BWU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
230 234Right-handed 310
Helix 2
AA2
A
235 250Right-handed alpha
Helix 3
AA3
A
256 261Right-handed 310
Helix 4
AA4
A
263 268Right-handed alpha
Helix 5
AA5
A
271 279Right-handed alpha
Helix 6
AA6
A
282 296Right-handed alpha
Helix 7
AA7
A
301 325Right-handed alpha
Helix 8
AA8
A
359 363Right-handed 310
Helix 9
AA9
A
369 374Right-handed alpha
Helix 10
AB1
A
477 480Right-handed 310
Helix 11
AB2
A
484 504Right-handed alpha
Helix 12
AB3
A
516 521Right-handed alpha
Helix 13
AB4
A
522 524Right-handed 310
Back to top of page

There are 2 sheets in PDB entry 8BWU. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 365first strand
Strand 2
A
347 352parallel
Strand 3
A
328 332parallel
Strand 4
A
381 385parallel
Strand 5
A
396 400parallel
Strand 6
A
507 511anti-parallel
Strand 7
A
439 441anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 448first strand
Strand 2
A
473 475parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il