Analysis of interatomic Contacts of Structural Units in PDB entry:
8BX5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BX5 entry

There are 5 chains in PDB entry 8BX5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 12	TYR 443
B	ALA 12	TYR 443
C	ALA 12	TYR 443
D	ALA 12	TYR 443
E	ALA 12	TYR 443

There are 43 helices in PDB entry 8BX5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	22	Right-handed alpha
Helix 2	AA2	A	91	95	Right-handed 310
Helix 3	AA3	A	219	239	Right-handed alpha
Helix 4	AA4	A	240	242	Right-handed 310
Helix 5	AA5	A	243	247	Right-handed 310
Helix 6	AA6	A	248	271	Right-handed alpha
Helix 7	AA7	A	279	307	Right-handed alpha
Helix 8	AA8	A	416	441	Right-handed alpha
Helix 9	AA9	B	13	22	Right-handed alpha
Helix 10	AB1	B	79	83	Right-handed 310
Helix 11	AB2	B	91	95	Right-handed 310
Helix 12	AB3	B	141	145	Right-handed 310
Helix 13	AB4	B	219	239	Right-handed alpha
Helix 14	AB5	B	240	242	Right-handed 310
Helix 15	AB6	B	243	247	Right-handed 310
Helix 16	AB7	B	248	271	Right-handed alpha
Helix 17	AB8	B	279	307	Right-handed alpha
Helix 18	AB9	B	416	442	Right-handed alpha
Helix 19	AC1	C	13	22	Right-handed alpha
Helix 20	AC2	C	91	95	Right-handed 310
Helix 21	AC3	C	219	238	Right-handed alpha
Helix 22	AC4	C	239	242	Right-handed 310
Helix 23	AC5	C	243	247	Right-handed 310
Helix 24	AC6	C	248	271	Right-handed alpha
Helix 25	AC7	C	279	307	Right-handed alpha
Helix 26	AC8	C	416	443	Right-handed alpha
Helix 27	AC9	D	13	22	Right-handed alpha
Helix 28	AD1	D	91	95	Right-handed 310
Helix 29	AD2	D	219	239	Right-handed alpha
Helix 30	AD3	D	240	242	Right-handed 310
Helix 31	AD4	D	243	247	Right-handed 310
Helix 32	AD5	D	248	271	Right-handed alpha
Helix 33	AD6	D	279	307	Right-handed alpha
Helix 34	AD7	D	416	441	Right-handed alpha
Helix 35	AD8	E	13	22	Right-handed alpha
Helix 36	AD9	E	79	83	Right-handed 310
Helix 37	AE1	E	91	95	Right-handed 310
Helix 38	AE2	E	219	239	Right-handed alpha
Helix 39	AE3	E	240	242	Right-handed 310
Helix 40	AE4	E	243	247	Right-handed 310
Helix 41	AE5	E	248	271	Right-handed alpha
Helix 42	AE6	E	279	307	Right-handed alpha
Helix 43	AE7	E	416	441	Right-handed alpha

There are 16 sheets in PDB entry 8BX5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	137	first strand
Strand 2	A	59	69	anti-parallel
Strand 3	A	42	54	anti-parallel
Strand 4	A	169	170	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	90	first strand
Strand 2	A	118	120	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	151	157	anti-parallel
Strand 3	A	207	215	anti-parallel
Strand 4	A	186	195	anti-parallel
Strand 5	A	179	180	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	131	137	first strand
Strand 2	B	59	69	anti-parallel
Strand 3	B	39	54	anti-parallel
Strand 4	B	166	170	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	118	120	anti-parallel
Strand 3	B	126	127	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	152	158	anti-parallel
Strand 3	B	207	215	anti-parallel
Strand 4	B	186	189	anti-parallel
Strand 5	B	179	181	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	152	158	anti-parallel
Strand 3	B	207	215	anti-parallel
Strand 4	B	193	195	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	137	first strand
Strand 2	C	59	69	anti-parallel
Strand 3	C	39	54	anti-parallel
Strand 4	C	166	170	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	90	first strand
Strand 2	C	118	120	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	101	102	first strand
Strand 2	C	151	157	anti-parallel
Strand 3	C	207	215	anti-parallel
Strand 4	C	186	195	anti-parallel
Strand 5	C	179	181	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	131	137	first strand
Strand 2	D	59	69	anti-parallel
Strand 3	D	42	54	anti-parallel
Strand 4	D	169	170	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	90	first strand
Strand 2	D	118	120	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	102	first strand
Strand 2	D	151	157	anti-parallel
Strand 3	D	205	216	anti-parallel
Strand 4	D	185	197	anti-parallel
Strand 5	D	179	181	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	131	137	first strand
Strand 2	E	59	69	anti-parallel
Strand 3	E	42	54	anti-parallel
Strand 4	E	169	170	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	88	90	first strand
Strand 2	E	118	120	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	101	102	first strand
Strand 2	E	151	157	anti-parallel
Strand 3	E	207	216	anti-parallel
Strand 4	E	185	195	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BX5

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BX5