Analysis of interatomic Contacts of Structural Units in PDB entry:
8BXD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BXD entry

There are 5 chains in PDB entry 8BXD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 44	TYR 475
B	ALA 44	TYR 475
C	ALA 44	TYR 475
D	ALA 44	TYR 475
E	ALA 44	TYR 475

There are 35 helices in PDB entry 8BXD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	54	Right-handed alpha
Helix 2	AA2	A	110	114	Right-handed 310
Helix 3	AA3	A	251	271	Right-handed alpha
Helix 4	AA4	A	272	274	Right-handed 310
Helix 5	AA5	A	280	303	Right-handed alpha
Helix 6	AA6	A	311	337	Right-handed alpha
Helix 7	AA7	A	449	475	Right-handed alpha
Helix 8	AA8	B	45	54	Right-handed alpha
Helix 9	AA9	B	110	114	Right-handed 310
Helix 10	AB1	B	251	271	Right-handed alpha
Helix 11	AB2	B	272	274	Right-handed 310
Helix 12	AB3	B	280	303	Right-handed alpha
Helix 13	AB4	B	311	337	Right-handed alpha
Helix 14	AB5	B	449	475	Right-handed alpha
Helix 15	AB6	C	45	54	Right-handed alpha
Helix 16	AB7	C	110	114	Right-handed 310
Helix 17	AB8	C	251	271	Right-handed alpha
Helix 18	AB9	C	272	274	Right-handed 310
Helix 19	AC1	C	280	303	Right-handed alpha
Helix 20	AC2	C	311	337	Right-handed alpha
Helix 21	AC3	C	449	475	Right-handed alpha
Helix 22	AC4	D	45	54	Right-handed alpha
Helix 23	AC5	D	110	114	Right-handed 310
Helix 24	AC6	D	251	271	Right-handed alpha
Helix 25	AC7	D	272	274	Right-handed 310
Helix 26	AC8	D	280	303	Right-handed alpha
Helix 27	AC9	D	311	337	Right-handed alpha
Helix 28	AD1	D	449	475	Right-handed alpha
Helix 29	AD2	E	45	54	Right-handed alpha
Helix 30	AD3	E	110	114	Right-handed 310
Helix 31	AD4	E	251	271	Right-handed alpha
Helix 32	AD5	E	272	274	Right-handed 310
Helix 33	AD6	E	280	303	Right-handed alpha
Helix 34	AD7	E	311	337	Right-handed alpha
Helix 35	AD8	E	449	475	Right-handed alpha

There are 25 sheets in PDB entry 8BXD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	122	first strand
Strand 2	A	150	152	anti-parallel
Strand 3	A	157	159	anti-parallel
Strand 4	A	91	103	anti-parallel
Strand 5	A	163	169	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	122	first strand
Strand 2	A	150	152	anti-parallel
Strand 3	A	157	159	anti-parallel
Strand 4	A	91	103	anti-parallel
Strand 5	A	71	86	anti-parallel
Strand 6	A	198	202	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	134	first strand
Strand 2	A	184	190	anti-parallel
Strand 3	A	239	245	anti-parallel
Strand 4	A	218	221	anti-parallel
Strand 5	A	211	213	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	134	first strand
Strand 2	A	184	190	anti-parallel
Strand 3	A	239	245	anti-parallel
Strand 4	A	225	226	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	229	231	first strand
Strand 2	A	235	237	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	122	first strand
Strand 2	B	150	152	anti-parallel
Strand 3	B	157	159	anti-parallel
Strand 4	B	91	103	anti-parallel
Strand 5	B	163	169	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	120	122	first strand
Strand 2	B	150	152	anti-parallel
Strand 3	B	157	159	anti-parallel
Strand 4	B	91	103	anti-parallel
Strand 5	B	71	86	anti-parallel
Strand 6	B	198	202	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	134	first strand
Strand 2	B	184	190	anti-parallel
Strand 3	B	239	245	anti-parallel
Strand 4	B	218	221	anti-parallel
Strand 5	B	211	213	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	134	first strand
Strand 2	B	184	190	anti-parallel
Strand 3	B	239	245	anti-parallel
Strand 4	B	225	226	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	231	first strand
Strand 2	B	235	237	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	122	first strand
Strand 2	C	150	152	anti-parallel
Strand 3	C	157	159	anti-parallel
Strand 4	C	91	103	anti-parallel
Strand 5	C	163	169	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	120	122	first strand
Strand 2	C	150	152	anti-parallel
Strand 3	C	157	159	anti-parallel
Strand 4	C	91	103	anti-parallel
Strand 5	C	71	86	anti-parallel
Strand 6	C	198	202	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	134	first strand
Strand 2	C	184	190	anti-parallel
Strand 3	C	239	245	anti-parallel
Strand 4	C	218	221	anti-parallel
Strand 5	C	211	213	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	134	first strand
Strand 2	C	184	190	anti-parallel
Strand 3	C	239	245	anti-parallel
Strand 4	C	225	226	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	229	231	first strand
Strand 2	C	235	237	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	122	first strand
Strand 2	D	150	152	anti-parallel
Strand 3	D	157	159	anti-parallel
Strand 4	D	91	103	anti-parallel
Strand 5	D	163	169	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	120	122	first strand
Strand 2	D	150	152	anti-parallel
Strand 3	D	157	159	anti-parallel
Strand 4	D	91	103	anti-parallel
Strand 5	D	71	86	anti-parallel
Strand 6	D	198	202	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	134	first strand
Strand 2	D	184	190	anti-parallel
Strand 3	D	239	245	anti-parallel
Strand 4	D	218	221	anti-parallel
Strand 5	D	211	213	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	134	first strand
Strand 2	D	184	190	anti-parallel
Strand 3	D	239	245	anti-parallel
Strand 4	D	225	226	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	229	231	first strand
Strand 2	D	235	237	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	122	first strand
Strand 2	E	150	152	anti-parallel
Strand 3	E	157	159	anti-parallel
Strand 4	E	91	103	anti-parallel
Strand 5	E	163	169	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	120	122	first strand
Strand 2	E	150	152	anti-parallel
Strand 3	E	157	159	anti-parallel
Strand 4	E	91	103	anti-parallel
Strand 5	E	71	86	anti-parallel
Strand 6	E	198	202	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	134	first strand
Strand 2	E	184	190	anti-parallel
Strand 3	E	239	245	anti-parallel
Strand 4	E	218	221	anti-parallel
Strand 5	E	211	213	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	132	134	first strand
Strand 2	E	184	190	anti-parallel
Strand 3	E	239	245	anti-parallel
Strand 4	E	225	226	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	229	231	first strand
Strand 2	E	235	237	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BXD

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BXD