Analysis of interatomic Contacts of Structural Units in PDB entry:
8BXF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BXF entry

There are 5 chains in PDB entry 8BXF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 12	TYR 443
B	ALA 12	TYR 443
C	ALA 12	TYR 443
D	ALA 12	TYR 443
E	ALA 12	TYR 443

There are 35 helices in PDB entry 8BXF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	22	Right-handed alpha
Helix 2	AA2	A	78	82	Right-handed 310
Helix 3	AA3	A	219	239	Right-handed alpha
Helix 4	AA4	A	240	242	Right-handed 310
Helix 5	AA5	A	248	271	Right-handed alpha
Helix 6	AA6	A	279	305	Right-handed alpha
Helix 7	AA7	A	417	443	Right-handed alpha
Helix 8	AA8	B	13	22	Right-handed alpha
Helix 9	AA9	B	78	82	Right-handed 310
Helix 10	AB1	B	219	239	Right-handed alpha
Helix 11	AB2	B	240	242	Right-handed 310
Helix 12	AB3	B	248	271	Right-handed alpha
Helix 13	AB4	B	279	305	Right-handed alpha
Helix 14	AB5	B	417	443	Right-handed alpha
Helix 15	AB6	C	13	22	Right-handed alpha
Helix 16	AB7	C	78	82	Right-handed 310
Helix 17	AB8	C	219	239	Right-handed alpha
Helix 18	AB9	C	240	242	Right-handed 310
Helix 19	AC1	C	248	271	Right-handed alpha
Helix 20	AC2	C	279	305	Right-handed alpha
Helix 21	AC3	C	417	443	Right-handed alpha
Helix 22	AC4	D	13	22	Right-handed alpha
Helix 23	AC5	D	78	82	Right-handed 310
Helix 24	AC6	D	219	239	Right-handed alpha
Helix 25	AC7	D	240	242	Right-handed 310
Helix 26	AC8	D	248	271	Right-handed alpha
Helix 27	AC9	D	279	305	Right-handed alpha
Helix 28	AD1	D	417	443	Right-handed alpha
Helix 29	AD2	E	13	22	Right-handed alpha
Helix 30	AD3	E	78	82	Right-handed 310
Helix 31	AD4	E	219	239	Right-handed alpha
Helix 32	AD5	E	240	242	Right-handed 310
Helix 33	AD6	E	248	271	Right-handed alpha
Helix 34	AD7	E	279	305	Right-handed alpha
Helix 35	AD8	E	417	443	Right-handed alpha

There are 25 sheets in PDB entry 8BXF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	90	first strand
Strand 2	A	118	120	anti-parallel
Strand 3	A	125	127	anti-parallel
Strand 4	A	59	71	anti-parallel
Strand 5	A	131	137	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	88	90	first strand
Strand 2	A	118	120	anti-parallel
Strand 3	A	125	127	anti-parallel
Strand 4	A	59	71	anti-parallel
Strand 5	A	39	54	anti-parallel
Strand 6	A	166	170	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	152	158	anti-parallel
Strand 3	A	207	213	anti-parallel
Strand 4	A	186	189	anti-parallel
Strand 5	A	179	181	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	100	102	first strand
Strand 2	A	152	158	anti-parallel
Strand 3	A	207	213	anti-parallel
Strand 4	A	193	194	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	197	199	first strand
Strand 2	A	203	205	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	118	120	anti-parallel
Strand 3	B	125	127	anti-parallel
Strand 4	B	59	71	anti-parallel
Strand 5	B	131	137	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	88	90	first strand
Strand 2	B	118	120	anti-parallel
Strand 3	B	125	127	anti-parallel
Strand 4	B	59	71	anti-parallel
Strand 5	B	39	54	anti-parallel
Strand 6	B	166	170	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	152	158	anti-parallel
Strand 3	B	207	213	anti-parallel
Strand 4	B	186	189	anti-parallel
Strand 5	B	179	181	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	102	first strand
Strand 2	B	152	158	anti-parallel
Strand 3	B	207	213	anti-parallel
Strand 4	B	193	194	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	197	199	first strand
Strand 2	B	203	205	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	90	first strand
Strand 2	C	118	120	anti-parallel
Strand 3	C	125	127	anti-parallel
Strand 4	C	59	71	anti-parallel
Strand 5	C	131	137	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	90	first strand
Strand 2	C	118	120	anti-parallel
Strand 3	C	125	127	anti-parallel
Strand 4	C	59	71	anti-parallel
Strand 5	C	39	54	anti-parallel
Strand 6	C	166	170	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	C	152	158	anti-parallel
Strand 3	C	207	213	anti-parallel
Strand 4	C	186	189	anti-parallel
Strand 5	C	179	181	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	100	102	first strand
Strand 2	C	152	158	anti-parallel
Strand 3	C	207	213	anti-parallel
Strand 4	C	193	194	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	197	199	first strand
Strand 2	C	203	205	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	90	first strand
Strand 2	D	118	120	anti-parallel
Strand 3	D	125	127	anti-parallel
Strand 4	D	59	71	anti-parallel
Strand 5	D	131	137	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	90	first strand
Strand 2	D	118	120	anti-parallel
Strand 3	D	125	127	anti-parallel
Strand 4	D	59	71	anti-parallel
Strand 5	D	39	54	anti-parallel
Strand 6	D	166	170	parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	102	first strand
Strand 2	D	152	158	anti-parallel
Strand 3	D	207	213	anti-parallel
Strand 4	D	186	189	anti-parallel
Strand 5	D	179	181	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	100	102	first strand
Strand 2	D	152	158	anti-parallel
Strand 3	D	207	213	anti-parallel
Strand 4	D	193	194	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	197	199	first strand
Strand 2	D	203	205	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	88	90	first strand
Strand 2	E	118	120	anti-parallel
Strand 3	E	125	127	anti-parallel
Strand 4	E	59	71	anti-parallel
Strand 5	E	131	137	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	88	90	first strand
Strand 2	E	118	120	anti-parallel
Strand 3	E	125	127	anti-parallel
Strand 4	E	59	71	anti-parallel
Strand 5	E	39	54	anti-parallel
Strand 6	E	166	170	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	102	first strand
Strand 2	E	152	158	anti-parallel
Strand 3	E	207	213	anti-parallel
Strand 4	E	186	189	anti-parallel
Strand 5	E	179	181	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	100	102	first strand
Strand 2	E	152	158	anti-parallel
Strand 3	E	207	213	anti-parallel
Strand 4	E	193	194	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	197	199	first strand
Strand 2	E	203	205	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BXF

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BXF