Analysis of interatomic Contacts of Structural Units in PDB entry:
8BY2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BY2 entry

There are 2 chains in PDB entry 8BY2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1MET 560
B
 MET 1MET 560
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 8BY2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 26Right-handed alpha
Helix 2
AA2
A
29 42Right-handed alpha
Helix 3
AA3
A
53 72Right-handed alpha
Helix 4
AA4
A
75 82Right-handed alpha
Helix 5
AA5
A
82 109Right-handed alpha
Helix 6
AA6
A
111 123Right-handed alpha
Helix 7
AA7
A
128 138Right-handed alpha
Helix 8
AA8
A
142 171Right-handed alpha
Helix 9
AA9
A
174 177Right-handed 310
Helix 10
AB1
A
178 183Right-handed alpha
Helix 11
AB2
A
185 202Right-handed alpha
Helix 12
AB3
A
203 212Right-handed alpha
Helix 13
AB4
A
217 238Right-handed alpha
Helix 14
AB5
A
240 255Right-handed alpha
Helix 15
AB6
A
257 283Right-handed alpha
Helix 16
AB7
A
293 316Right-handed alpha
Helix 17
AB8
A
324 333Right-handed alpha
Helix 18
AB9
A
337 348Right-handed alpha
Helix 19
AC1
A
353 370Right-handed alpha
Helix 20
AC2
A
370 382Right-handed alpha
Helix 21
AC3
A
408 419Right-handed alpha
Helix 22
AC4
A
431 439Right-handed 310
Helix 23
AC5
A
452 459Right-handed alpha
Helix 24
AC6
A
473 488Right-handed alpha
Helix 25
AC7
A
499 510Right-handed alpha
Helix 26
AC8
A
519 534Right-handed alpha
Helix 27
AC9
A
536 560Right-handed alpha
Helix 28
AD1
B
2 19Right-handed alpha
Helix 29
AD2
B
19 27Right-handed alpha
Helix 30
AD3
B
29 41Right-handed alpha
Helix 31
AD4
B
51 72Right-handed alpha
Helix 32
AD5
B
75 82Right-handed alpha
Helix 33
AD6
B
89 109Right-handed alpha
Helix 34
AD7
B
111 123Right-handed alpha
Helix 35
AD8
B
126 138Right-handed alpha
Helix 36
AD9
B
142 165Right-handed alpha
Helix 37
AE1
B
165 170Right-handed alpha
Helix 38
AE2
B
176 202Right-handed alpha
Helix 39
AE3
B
203 212Right-handed alpha
Helix 40
AE4
B
217 236Right-handed alpha
Helix 41
AE5
B
240 255Right-handed alpha
Helix 42
AE6
B
257 266Right-handed alpha
Helix 43
AE7
B
267 269Right-handed 310
Helix 44
AE8
B
270 284Right-handed alpha
Helix 45
AE9
B
286 292Right-handed alpha
Helix 46
AF1
B
292 316Right-handed alpha
Helix 47
AF2
B
324 333Right-handed alpha
Helix 48
AF3
B
337 349Right-handed alpha
Helix 49
AF4
B
353 370Right-handed alpha
Helix 50
AF5
B
370 383Right-handed alpha
Helix 51
AF6
B
408 420Right-handed alpha
Helix 52
AF7
B
436 440Right-handed 310
Helix 53
AF8
B
452 457Right-handed alpha
Helix 54
AF9
B
458 460Right-handed 310
Helix 55
AG1
B
473 488Right-handed alpha
Helix 56
AG2
B
499 510Right-handed alpha
Helix 57
AG3
B
519 534Right-handed alpha
Helix 58
AG4
B
536 560Right-handed alpha
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There are 4 sheets in PDB entry 8BY2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
444 447first strand
Strand 2
A
425 429parallel
Strand 3
A
402 405parallel
Strand 4
A
466 469parallel
Strand 5
A
492 494parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
496 497first strand
Strand 2
A
515 516parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
444 447first strand
Strand 2
B
424 429parallel
Strand 3
B
401 405parallel
Strand 4
B
466 469parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
496 497first strand
Strand 2
B
515 516parallel
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