Analysis of interatomic Contacts of Structural Units in PDB entry:
8BYA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BYA entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 9 chains in PDB entry 8BYA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 16THR 158
A
 THR 160LEU 296
B
 VAL 175ASN 431
C
 LYS 25ARG 93
D
 PRO 1002GLU 1162
E
 VAL 2095GLN 2419
F
 GLN 3005LEU 3073
G
 ALA 4181GLN 4186
G
 PRO 4188LYS 4190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 49 helices in PDB entry 8BYA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 53Right-handed alpha
Helix 2
AA2
A
100 105Right-handed alpha
Helix 3
AA3
A
108 120Right-handed alpha
Helix 4
AA4
A
129 132Right-handed 310
Helix 5
AA5
A
165 169Right-handed 310
Helix 6
AA6
A
170 175Right-handed alpha
Helix 7
AA7
A
183 189Right-handed alpha
Helix 8
AA8
A
193 198Right-handed alpha
Helix 9
AA9
A
207 220Right-handed alpha
Helix 10
AB1
A
229 233Right-handed 310
Helix 11
AB2
A
257 262Right-handed alpha
Helix 12
AB3
B
178 193Right-handed alpha
Helix 13
AB4
B
197 202Right-handed 310
Helix 14
AB5
B
207 226Right-handed alpha
Helix 15
AB6
B
228 244Right-handed alpha
Helix 16
AB7
B
252 269Right-handed alpha
Helix 17
AB8
B
274 281Right-handed alpha
Helix 18
AB9
B
287 302Right-handed alpha
Helix 19
AC1
B
310 318Right-handed alpha
Helix 20
AC2
B
329 343Right-handed alpha
Helix 21
AC3
B
351 368Right-handed alpha
Helix 22
AC4
B
373 381Right-handed alpha
Helix 23
AC5
B
387 400Right-handed alpha
Helix 24
AC6
B
408 414Right-handed alpha
Helix 25
AC7
B
415 419Right-handed 310
Helix 26
AC8
C
25 29Right-handed 310
Helix 27
AC9
C
37 52Right-handed alpha
Helix 28
AD1
C
55 61Right-handed alpha
Helix 29
AD2
D
1024 1031Right-handed alpha
Helix 30
AD3
D
1045 1063Right-handed alpha
Helix 31
AD4
D
1086 1092Right-handed alpha
Helix 32
AD5
D
1096 1111Right-handed alpha
Helix 33
AD6
D
1113 1128Right-handed alpha
Helix 34
AD7
D
1131 1139Right-handed alpha
Helix 35
AD8
D
1148 1157Right-handed alpha
Helix 36
AD9
D
1158 1160Right-handed 310
Helix 37
AE1
E
2101 2111Right-handed alpha
Helix 38
AE2
E
2113 2119Right-handed alpha
Helix 39
AE3
E
2125 2132Right-handed alpha
Helix 40
AE4
E
2151 2158Right-handed alpha
Helix 41
AE5
E
2194 2203Right-handed alpha
Helix 42
AE6
E
2219 2226Right-handed alpha
Helix 43
AE7
E
2244 2255Right-handed alpha
Helix 44
AE8
E
2270 2280Right-handed alpha
Helix 45
AE9
E
2298 2309Right-handed alpha
Helix 46
AF1
E
2327 2332Right-handed alpha
Helix 47
AF2
E
2350 2359Right-handed 310
Helix 48
AF3
E
2374 2383Right-handed alpha
Helix 49
AF4
F
3042 3047Right-handed alpha
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There are 11 sheets in PDB entry 8BYA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 20first strand
Strand 2
C
77 79anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 32first strand
Strand 2
A
79 81anti-parallel
Strand 3
A
66 68anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
75 76anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
134 135anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
62 63first strand
Strand 2
C
68 69anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2185 2187first strand
Strand 2
E
2162 2164parallel
Strand 3
E
2139 2141parallel
Strand 4
E
2416 2417parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2210 2212first strand
Strand 2
E
2234 2236parallel
Strand 3
E
2260 2261parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2287 2288first strand
Strand 2
E
2314 2315parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2364 2365first strand
Strand 2
E
2387 2388parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
2408 2409first strand
Strand 2
E
2412 2413anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
3007 3008first strand
Strand 2
F
3018 3023anti-parallel
Strand 3
F
3066 3071anti-parallel
Strand 4
F
3055 3059anti-parallel
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