Analysis of interatomic Contacts of Structural Units in PDB entry:
8BYH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BYH entry

There are 2 chains in PDB entry 8BYH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0THR 240
B
 HIS 0THR 240
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8BYH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 18Right-handed alpha
Helix 2
AA2
A
21 29Right-handed alpha
Helix 3
AA3
A
40 43Right-handed 310
Helix 4
AA4
A
64 79Right-handed alpha
Helix 5
AA5
A
94 102Right-handed alpha
Helix 6
AA6
A
118 126Right-handed alpha
Helix 7
AA7
A
139 153Right-handed alpha
Helix 8
AA8
A
192 198Right-handed alpha
Helix 9
AA9
A
199 219Right-handed alpha
Helix 10
AB1
A
219 226Right-handed alpha
Helix 11
AB2
A
229 240Right-handed alpha
Helix 12
AB3
B
10 18Right-handed alpha
Helix 13
AB4
B
20 29Right-handed alpha
Helix 14
AB5
B
40 43Right-handed 310
Helix 15
AB6
B
64 79Right-handed alpha
Helix 16
AB7
B
94 103Right-handed alpha
Helix 17
AB8
B
118 126Right-handed alpha
Helix 18
AB9
B
139 153Right-handed alpha
Helix 19
AC1
B
192 198Right-handed alpha
Helix 20
AC2
B
199 219Right-handed alpha
Helix 21
AC3
B
219 226Right-handed alpha
Helix 22
AC4
B
229 238Right-handed alpha
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There are 6 sheets in PDB entry 8BYH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 38first strand
Strand 2
A
2 8parallel
Strand 3
A
106 110parallel
Strand 4
A
82 86parallel
Strand 5
A
128 131parallel
Strand 6
A
91 92parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
61 63anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
189 190anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 38first strand
Strand 2
B
2 8parallel
Strand 3
B
106 110parallel
Strand 4
B
82 86parallel
Strand 5
B
128 131parallel
Strand 6
B
91 92parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
61 63anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
185 186first strand
Strand 2
B
189 190anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il