Analysis of interatomic Contacts of Structural Units in PDB entry:
8BYK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BYK entry

There is 1 chain in PDB entry 8BYK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -2ALA 505
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 8BYK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-2 17Right-handed alpha
Helix 2
AA2
A
19 28Right-handed alpha
Helix 3
AA3
A
52 67Right-handed alpha
Helix 4
AA4
A
71 91Right-handed alpha
Helix 5
AA5
A
100 111Right-handed alpha
Helix 6
AA6
A
118 143Right-handed alpha
Helix 7
AA7
A
147 152Right-handed alpha
Helix 8
AA8
A
156 165Right-handed alpha
Helix 9
AA9
A
170 189Right-handed alpha
Helix 10
AB1
A
204 208Right-handed 310
Helix 11
AB2
A
210 217Right-handed alpha
Helix 12
AB3
A
229 240Right-handed alpha
Helix 13
AB4
A
249 264Right-handed alpha
Helix 14
AB5
A
280 286Right-handed alpha
Helix 15
AB6
A
300 316Right-handed alpha
Helix 16
AB7
A
317 335Right-handed alpha
Helix 17
AB8
A
346 362Right-handed alpha
Helix 18
AB9
A
363 380Right-handed alpha
Helix 19
AC1
A
410 424Right-handed alpha
Helix 20
AC2
A
428 434Right-handed 310
Helix 21
AC3
A
499 503Right-handed alpha
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There are 4 sheets in PDB entry 8BYK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 193first strand
Strand 2
A
196 198anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 223first strand
Strand 2
A
277 279anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
272 273anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
391 394first strand
Strand 2
A
399 402anti-parallel
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