Analysis of interatomic Contacts of Structural Units in PDB entry:
8BYL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BYL entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 5 chains in PDB entry 8BYL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 1002CYS 1160
B
 PRO 2093LEU 2424
C
 GLN 3005LEU 3073
D
 ASP 4176GLN 4186
D
 PRO 4188LYS 4190
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 8BYL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1024 1032Right-handed alpha
Helix 2
AA2
A
1045 1057Right-handed alpha
Helix 3
AA3
A
1069 1074Right-handed alpha
Helix 4
AA4
A
1074 1080Right-handed alpha
Helix 5
AA5
A
1089 1094Right-handed alpha
Helix 6
AA6
A
1096 1111Right-handed alpha
Helix 7
AA7
A
1112 1127Right-handed alpha
Helix 8
AA8
A
1131 1140Right-handed alpha
Helix 9
AA9
A
1148 1157Right-handed alpha
Helix 10
AB1
B
2101 2111Right-handed alpha
Helix 11
AB2
B
2113 2118Right-handed alpha
Helix 12
AB3
B
2119 2123Right-handed 310
Helix 13
AB4
B
2124 2132Right-handed alpha
Helix 14
AB5
B
2148 2158Right-handed alpha
Helix 15
AB6
B
2194 2203Right-handed alpha
Helix 16
AB7
B
2219 2226Right-handed alpha
Helix 17
AB8
B
2227 2229Right-handed 310
Helix 18
AB9
B
2244 2255Right-handed alpha
Helix 19
AC1
B
2270 2281Right-handed alpha
Helix 20
AC2
B
2293 2297Right-handed 310
Helix 21
AC3
B
2298 2309Right-handed alpha
Helix 22
AC4
B
2324 2326Right-handed 310
Helix 23
AC5
B
2327 2334Right-handed alpha
Helix 24
AC6
B
2352 2357Right-handed alpha
Helix 25
AC7
B
2374 2382Right-handed alpha
Helix 26
AC8
C
3025 3030Right-handed alpha
Helix 27
AC9
C
3039 3044Right-handed alpha
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There are 6 sheets in PDB entry 8BYL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1008 1009first strand
Strand 2
A
1013 1014anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2185 2187first strand
Strand 2
B
2162 2164parallel
Strand 3
B
2140 2141parallel
Strand 4
B
2416 2417parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2210 2212first strand
Strand 2
B
2234 2236parallel
Strand 3
B
2260 2262parallel
Strand 4
B
2287 2288parallel
Strand 5
B
2314 2315parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2317 2318first strand
Strand 2
B
2342 2343parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3007 3008first strand
Strand 2
C
3017 3023anti-parallel
Strand 3
C
3012 3014anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
3007 3008first strand
Strand 2
C
3017 3023anti-parallel
Strand 3
C
3066 3072anti-parallel
Strand 4
C
3055 3059anti-parallel
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