Analysis of interatomic Contacts of Structural Units in PDB entry:
8BYP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BYP entry

There are 2 chains in PDB entry 8BYP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
N	ILE 9	ILE 1174
X	LYS 2	ASP 1306

There are 60 helices in PDB entry 8BYP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	N	59	63	Right-handed 310
Helix 2	AA2	N	76	97	Right-handed alpha
Helix 3	AA3	N	97	109	Right-handed alpha
Helix 4	AA4	N	193	211	Right-handed alpha
Helix 5	AA5	N	238	244	Right-handed alpha
Helix 6	AA6	N	261	281	Right-handed alpha
Helix 7	AA7	N	292	302	Right-handed alpha
Helix 8	AA8	N	303	308	Right-handed alpha
Helix 9	AA9	N	311	319	Right-handed alpha
Helix 10	AB1	N	330	334	Right-handed 310
Helix 11	AB2	N	343	347	Right-handed alpha
Helix 12	AB3	N	406	411	Right-handed alpha
Helix 13	AB4	N	435	442	Right-handed alpha
Helix 14	AB5	N	475	484	Right-handed alpha
Helix 15	AB6	N	499	504	Right-handed alpha
Helix 16	AB7	N	515	524	Right-handed alpha
Helix 17	AB8	N	533	554	Right-handed alpha
Helix 18	AB9	N	570	575	Right-handed alpha
Helix 19	AC1	N	582	591	Right-handed alpha
Helix 20	AC2	N	592	596	Right-handed 310
Helix 21	AC3	N	623	654	Right-handed alpha
Helix 22	AC4	N	655	681	Right-handed alpha
Helix 23	AC5	N	682	691	Right-handed alpha
Helix 24	AC6	N	694	739	Right-handed alpha
Helix 25	AC7	N	739	763	Right-handed alpha
Helix 26	AC8	N	768	775	Right-handed alpha
Helix 27	AC9	N	775	780	Right-handed alpha
Helix 28	AD1	N	784	788	Right-handed 310
Helix 29	AD2	N	792	801	Right-handed alpha
Helix 30	AD3	N	1003	1014	Right-handed alpha
Helix 31	AD4	X	29	33	Right-handed 310
Helix 32	AD5	X	84	105	Right-handed alpha
Helix 33	AD6	X	105	118	Right-handed alpha
Helix 34	AD7	X	171	177	Right-handed alpha
Helix 35	AD8	X	220	237	Right-handed alpha
Helix 36	AD9	X	264	271	Right-handed alpha
Helix 37	AE1	X	272	301	Right-handed alpha
Helix 38	AE2	X	302	305	Right-handed 310
Helix 39	AE3	X	309	319	Right-handed alpha
Helix 40	AE4	X	331	344	Right-handed alpha
Helix 41	AE5	X	347	355	Right-handed alpha
Helix 42	AE6	X	473	475	Right-handed 310
Helix 43	AE7	X	559	567	Right-handed alpha
Helix 44	AE8	X	585	592	Right-handed alpha
Helix 45	AE9	X	602	608	Right-handed alpha
Helix 46	AF1	X	618	635	Right-handed alpha
Helix 47	AF2	X	653	658	Right-handed alpha
Helix 48	AF3	X	669	676	Right-handed alpha
Helix 49	AF4	X	704	738	Right-handed alpha
Helix 50	AF5	X	738	770	Right-handed alpha
Helix 51	AF6	X	777	819	Right-handed alpha
Helix 52	AF7	X	819	844	Right-handed alpha
Helix 53	AF8	X	845	850	Right-handed alpha
Helix 54	AF9	X	850	865	Right-handed alpha
Helix 55	AG1	X	879	886	Right-handed alpha
Helix 56	AG2	X	886	892	Right-handed alpha
Helix 57	AG3	X	1091	1102	Right-handed alpha
Helix 58	AG4	X	1274	1280	Right-handed alpha
Helix 59	AG5	X	1281	1284	Right-handed 310
Helix 60	AG6	X	1287	1292	Right-handed 310

There are 33 sheets in PDB entry 8BYP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	18	22	first strand
Strand 2	N	34	41	anti-parallel
Strand 3	N	44	46	anti-parallel
Strand 4	N	145	148	parallel
Strand 5	N	176	178	parallel
Strand 6	N	158	160	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	125	126	first strand
Strand 2	N	140	141	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	183	184	first strand
Strand 2	N	340	341	anti-parallel
Strand 3	N	363	364	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	219	224	first strand
Strand 2	N	233	237	anti-parallel
Strand 3	N	403	404	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	348	349	first strand
Strand 2	N	352	353	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	390	394	first strand
Strand 2	N	380	385	anti-parallel
Strand 3	N	468	471	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	494	496	first strand
Strand 2	N	510	512	parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	555	556	first strand
Strand 2	X	639	640	anti-parallel
Strand 3	X	649	650	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	815	817	first strand
Strand 2	N	990	998	anti-parallel
Strand 3	N	881	889	anti-parallel
Strand 4	N	942	949	anti-parallel
Strand 5	N	954	959	anti-parallel
Strand 6	N	962	963	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	847	850	first strand
Strand 2	N	855	859	anti-parallel
Strand 3	N	990	998	anti-parallel
Strand 4	N	881	889	anti-parallel
Strand 5	N	942	949	anti-parallel
Strand 6	N	954	959	anti-parallel
Strand 7	N	967	968	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	820	824	first strand
Strand 2	N	827	831	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	841	842	first strand
Strand 2	N	866	868	anti-parallel
Strand 3	N	981	983	anti-parallel
Strand 4	N	895	902	anti-parallel
Strand 5	N	907	913	anti-parallel
Strand 6	N	916	922	anti-parallel
Strand 7	N	928	933	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	1036	1037	first strand
Strand 2	N	1172	1173	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	1047	1049	first strand
Strand 2	N	1056	1060	anti-parallel
Strand 3	N	1150	1157	anti-parallel
Strand 4	N	1139	1143	anti-parallel
Strand 5	N	1128	1136	anti-parallel
Strand 6	N	1120	1125	anti-parallel
Strand 7	N	1088	1093	anti-parallel
Strand 8	N	1071	1074	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	1100	1101	first strand
Strand 2	N	1110	1111	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	N	1160	1161	first strand
Strand 2	N	1164	1165	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	144	150	first strand
Strand 2	X	136	141	anti-parallel
Strand 3	X	19	23	anti-parallel
Strand 4	X	38	44	anti-parallel
Strand 5	X	47	49	anti-parallel
Strand 6	X	153	156	parallel
Strand 7	X	183	186	parallel
Strand 8	X	166	168	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	123	125	first strand
Strand 2	X	128	130	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	191	192	first strand
Strand 2	X	372	374	anti-parallel
Strand 3	X	408	410	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	195	196	first strand
Strand 2	X	216	217	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	245	246	first strand
Strand 2	X	262	263	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	321	324	first strand
Strand 2	X	327	330	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	468	471	first strand
Strand 2	X	419	422	anti-parallel
Strand 3	X	552	553	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	582	583	first strand
Strand 2	X	596	597	parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	906	909	first strand
Strand 2	X	896	903	anti-parallel
Strand 3	X	1079	1086	anti-parallel
Strand 4	X	933	936	anti-parallel
Strand 5	X	923	926	anti-parallel

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There are 7 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	906	909	first strand
Strand 2	X	896	903	anti-parallel
Strand 3	X	1079	1086	anti-parallel
Strand 4	X	960	967	anti-parallel
Strand 5	X	1026	1033	anti-parallel
Strand 6	X	1037	1042	anti-parallel
Strand 7	X	1045	1051	anti-parallel

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There are 7 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	917	919	first strand
Strand 2	X	944	946	anti-parallel
Strand 3	X	1064	1066	anti-parallel
Strand 4	X	981	987	anti-parallel
Strand 5	X	991	997	anti-parallel
Strand 6	X	1000	1006	anti-parallel
Strand 7	X	1011	1015	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	1121	1123	first strand
Strand 2	X	1171	1173	anti-parallel
Strand 3	X	1193	1194	anti-parallel
Strand 4	X	1197	1202	anti-parallel
Strand 5	X	1213	1215	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	1121	1123	first strand
Strand 2	X	1171	1173	anti-parallel
Strand 3	X	1193	1194	anti-parallel
Strand 4	X	1197	1202	anti-parallel
Strand 5	X	1223	1224	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	1134	1139	first strand
Strand 2	X	1144	1149	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	1154	1156	first strand
Strand 2	X	1162	1164	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	1228	1230	first strand
Strand 2	X	1241	1243	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	1256	1260	first strand
Strand 2	X	1268	1272	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BYP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BYP