Analysis of interatomic Contacts of Structural Units in PDB entry:
8BYR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BYR entry

There are 6 chains in PDB entry 8BYR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 8GLN 158
B
 LEU 7SER 160
C
 LEU 7LEU 159
D
 LEU 7GLN 158
E
 LEU 7GLN 158
F
 LEU 7LEU 159
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8BYR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 40Right-handed alpha
Helix 2
AA2
A
52 67Right-handed alpha
Helix 3
AA3
A
84 91Right-handed alpha
Helix 4
AA4
A
97 111Right-handed alpha
Helix 5
AA5
A
113 119Right-handed alpha
Helix 6
AA6
A
137 157Right-handed alpha
Helix 7
AA7
B
17 22Right-handed alpha
Helix 8
AA8
B
27 40Right-handed alpha
Helix 9
AA9
B
52 66Right-handed alpha
Helix 10
AB1
B
84 91Right-handed alpha
Helix 11
AB2
B
97 111Right-handed alpha
Helix 12
AB3
B
113 119Right-handed alpha
Helix 13
AB4
B
137 159Right-handed alpha
Helix 14
AB5
C
28 40Right-handed alpha
Helix 15
AB6
C
52 66Right-handed alpha
Helix 16
AB7
C
84 91Right-handed alpha
Helix 17
AB8
C
97 111Right-handed alpha
Helix 18
AB9
C
113 118Right-handed alpha
Helix 19
AC1
C
137 158Right-handed alpha
Helix 20
AC2
D
17 22Right-handed alpha
Helix 21
AC3
D
27 40Right-handed alpha
Helix 22
AC4
D
52 66Right-handed alpha
Helix 23
AC5
D
84 91Right-handed alpha
Helix 24
AC6
D
97 111Right-handed alpha
Helix 25
AC7
D
113 118Right-handed alpha
Helix 26
AC8
D
137 148Right-handed alpha
Helix 27
AC9
D
151 157Right-handed alpha
Helix 28
AD1
E
17 22Right-handed alpha
Helix 29
AD2
E
27 39Right-handed alpha
Helix 30
AD3
E
52 66Right-handed alpha
Helix 31
AD4
E
84 91Right-handed alpha
Helix 32
AD5
E
97 112Right-handed alpha
Helix 33
AD6
E
113 118Right-handed alpha
Helix 34
AD7
E
137 157Right-handed alpha
Helix 35
AD8
F
27 40Right-handed alpha
Helix 36
AD9
F
52 66Right-handed alpha
Helix 37
AE1
F
84 90Right-handed alpha
Helix 38
AE2
F
91 93Right-handed 310
Helix 39
AE3
F
97 112Right-handed alpha
Helix 40
AE4
F
113 118Right-handed alpha
Helix 41
AE5
F
137 158Right-handed alpha
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There are 6 sheets in PDB entry 8BYR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 49first strand
Strand 2
A
9 16parallel
Strand 3
A
70 74parallel
Strand 4
A
129 134parallel
Strand 5
A
123 126anti-parallel
Strand 6
A
95 96anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 49first strand
Strand 2
B
9 16parallel
Strand 3
B
70 74parallel
Strand 4
B
129 134parallel
Strand 5
B
123 126anti-parallel
Strand 6
B
95 96anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
41 49first strand
Strand 2
C
9 16parallel
Strand 3
C
70 74parallel
Strand 4
C
129 134parallel
Strand 5
C
123 126anti-parallel
Strand 6
C
95 96anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
41 49first strand
Strand 2
D
9 16parallel
Strand 3
D
70 74parallel
Strand 4
D
129 134parallel
Strand 5
D
123 126anti-parallel
Strand 6
D
95 96anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
41 49first strand
Strand 2
E
9 16parallel
Strand 3
E
70 74parallel
Strand 4
E
129 134parallel
Strand 5
E
123 126anti-parallel
Strand 6
E
95 96anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
41 49first strand
Strand 2
F
9 16parallel
Strand 3
F
70 74parallel
Strand 4
F
129 134parallel
Strand 5
F
123 126anti-parallel
Strand 6
F
95 96anti-parallel
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