Analysis of interatomic Contacts of Structural Units in PDB entry:
8BYS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BYS entry

There are 3 chains in PDB entry 8BYS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 100GLY 422
B
 LEU 100GLY 421
C
 LEU 100GLY 422
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 8BYS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
100 113Right-handed alpha
Helix 2
AA2
B
101 113Right-handed alpha
Helix 3
AA3
B
240 244Right-handed 310
Helix 4
AA4
C
101 114Right-handed alpha
Helix 5
AA5
C
240 244Right-handed 310
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There are 6 sheets in PDB entry 8BYS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 17 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 130first strand
Strand 2
A
142 157anti-parallel
Strand 3
A
160 171anti-parallel
Strand 4
A
182 192anti-parallel
Strand 5
A
196 207anti-parallel
Strand 6
A
213 225anti-parallel
Strand 7
A
229 238anti-parallel
Strand 8
A
253 263anti-parallel
Strand 9
A
267 276anti-parallel
Strand 10
A
293 304anti-parallel
Strand 11
A
307 316anti-parallel
Strand 12
A
324 332anti-parallel
Strand 13
A
342 351anti-parallel
Strand 14
A
375 387anti-parallel
Strand 15
A
390 401anti-parallel
Strand 16
A
411 419anti-parallel
Strand 17
A
118 130anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 283first strand
Strand 2
A
286 290anti-parallel
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There are 17 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 130first strand
Strand 2
B
142 157anti-parallel
Strand 3
B
160 171anti-parallel
Strand 4
B
181 191anti-parallel
Strand 5
B
197 206anti-parallel
Strand 6
B
214 224anti-parallel
Strand 7
B
229 238anti-parallel
Strand 8
B
253 263anti-parallel
Strand 9
B
267 276anti-parallel
Strand 10
B
293 304anti-parallel
Strand 11
B
307 316anti-parallel
Strand 12
B
324 332anti-parallel
Strand 13
B
342 351anti-parallel
Strand 14
B
375 387anti-parallel
Strand 15
B
390 401anti-parallel
Strand 16
B
411 419anti-parallel
Strand 17
B
118 130anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 283first strand
Strand 2
B
286 290anti-parallel
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There are 17 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
118 130first strand
Strand 2
C
142 157anti-parallel
Strand 3
C
160 171anti-parallel
Strand 4
C
181 191anti-parallel
Strand 5
C
196 206anti-parallel
Strand 6
C
214 225anti-parallel
Strand 7
C
229 238anti-parallel
Strand 8
C
253 262anti-parallel
Strand 9
C
268 276anti-parallel
Strand 10
C
293 302anti-parallel
Strand 11
C
307 316anti-parallel
Strand 12
C
324 332anti-parallel
Strand 13
C
342 351anti-parallel
Strand 14
C
375 387anti-parallel
Strand 15
C
390 401anti-parallel
Strand 16
C
411 419anti-parallel
Strand 17
C
118 130anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
279 283first strand
Strand 2
C
286 290anti-parallel
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