Analysis of interatomic Contacts of Structural Units in PDB entry:
8BYT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BYT entry

There are 3 chains in PDB entry 8BYT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 113	PHE 420
B	ARG 113	PHE 420
C	ARG 113	PHE 420

There are 3 helices in PDB entry 8BYT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	240	244	Right-handed 310
Helix 2	AA2	B	240	244	Right-handed 310
Helix 3	AA3	C	240	244	Right-handed 310

There are 6 sheets in PDB entry 8BYT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 17 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	130	first strand
Strand 2	A	142	155	anti-parallel
Strand 3	A	160	171	anti-parallel
Strand 4	A	182	191	anti-parallel
Strand 5	A	196	207	anti-parallel
Strand 6	A	213	225	anti-parallel
Strand 7	A	229	238	anti-parallel
Strand 8	A	253	261	anti-parallel
Strand 9	A	268	276	anti-parallel
Strand 10	A	293	304	anti-parallel
Strand 11	A	307	316	anti-parallel
Strand 12	A	324	332	anti-parallel
Strand 13	A	342	351	anti-parallel
Strand 14	A	375	387	anti-parallel
Strand 15	A	390	401	anti-parallel
Strand 16	A	411	419	anti-parallel
Strand 17	A	117	130	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	283	first strand
Strand 2	A	286	290	anti-parallel

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There are 17 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	130	first strand
Strand 2	B	142	155	anti-parallel
Strand 3	B	160	171	anti-parallel
Strand 4	B	182	191	anti-parallel
Strand 5	B	196	207	anti-parallel
Strand 6	B	213	225	anti-parallel
Strand 7	B	229	238	anti-parallel
Strand 8	B	253	261	anti-parallel
Strand 9	B	268	276	anti-parallel
Strand 10	B	293	304	anti-parallel
Strand 11	B	307	316	anti-parallel
Strand 12	B	324	332	anti-parallel
Strand 13	B	342	351	anti-parallel
Strand 14	B	375	387	anti-parallel
Strand 15	B	390	401	anti-parallel
Strand 16	B	411	419	anti-parallel
Strand 17	B	117	130	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	283	first strand
Strand 2	B	286	290	anti-parallel

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There are 17 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	130	first strand
Strand 2	C	142	155	anti-parallel
Strand 3	C	160	171	anti-parallel
Strand 4	C	182	191	anti-parallel
Strand 5	C	196	207	anti-parallel
Strand 6	C	213	225	anti-parallel
Strand 7	C	229	238	anti-parallel
Strand 8	C	253	261	anti-parallel
Strand 9	C	268	276	anti-parallel
Strand 10	C	293	304	anti-parallel
Strand 11	C	307	316	anti-parallel
Strand 12	C	324	332	anti-parallel
Strand 13	C	342	351	anti-parallel
Strand 14	C	375	387	anti-parallel
Strand 15	C	390	401	anti-parallel
Strand 16	C	411	419	anti-parallel
Strand 17	C	117	130	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	279	283	first strand
Strand 2	C	286	290	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BYT

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BYT