Analysis of interatomic Contacts of Structural Units in PDB entry:
8BYV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BYV entry

There are 21 chains in PDB entry 8BYV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	G 7	C 1548
b	MET 6	GLY 227
c	GLY 2	GLU 205
d	ALA 2	ARG 200
e	THR 8	ASN 166
f	MET 1	GLU 94
g	VAL 7	HIS 153
h	THR 2	TRP 132
i	GLN 5	ARG 132
j	GLN 4	LEU 102
k	ARG 10	ARG 127
l	PRO 2	LYS 136
m	ALA 2	GLY 111
n	ALA 2	TRP 61
o	ALA 2	ARG 89
p	ALA 2	LYS 91
q	SER 2	ILE 86
r	GLY 22	GLU 79
s	SER 4	ALA 85
t	ASN 3	ASN 82
A	MET 1	ARG 116

There are 80 helices in PDB entry 8BYV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	b	8	15	Right-handed alpha
Helix 2	AA2	b	27	31	Right-handed 310
Helix 3	AA3	b	42	63	Right-handed alpha
Helix 4	AA4	b	76	88	Right-handed alpha
Helix 5	AA5	b	106	125	Right-handed alpha
Helix 6	AA6	b	130	148	Right-handed alpha
Helix 7	AA7	b	169	180	Right-handed alpha
Helix 8	AA8	b	206	227	Right-handed alpha
Helix 9	AA9	c	6	12	Right-handed alpha
Helix 10	AB1	c	27	42	Right-handed alpha
Helix 11	AB2	c	42	50	Right-handed alpha
Helix 12	AB3	c	71	76	Right-handed alpha
Helix 13	AB4	c	82	95	Right-handed alpha
Helix 14	AB5	c	112	125	Right-handed alpha
Helix 15	AB6	c	128	144	Right-handed alpha
Helix 16	AB7	d	9	16	Right-handed alpha
Helix 17	AB8	d	45	62	Right-handed alpha
Helix 18	AB9	d	64	78	Right-handed alpha
Helix 19	AC1	d	81	92	Right-handed alpha
Helix 20	AC2	d	93	101	Right-handed alpha
Helix 21	AC3	d	106	117	Right-handed alpha
Helix 22	AC4	d	143	146	Right-handed 310
Helix 23	AC5	d	148	156	Right-handed alpha
Helix 24	AC6	d	191	198	Right-handed alpha
Helix 25	AC7	e	55	70	Right-handed alpha
Helix 26	AC8	e	108	118	Right-handed alpha
Helix 27	AC9	e	132	146	Right-handed alpha
Helix 28	AD1	e	149	157	Right-handed alpha
Helix 29	AD2	f	15	32	Right-handed alpha
Helix 30	AD3	f	72	83	Right-handed alpha
Helix 31	AD4	g	21	30	Right-handed alpha
Helix 32	AD5	g	31	35	Right-handed 310
Helix 33	AD6	g	36	53	Right-handed alpha
Helix 34	AD7	g	57	69	Right-handed alpha
Helix 35	AD8	g	92	112	Right-handed alpha
Helix 36	AD9	g	117	129	Right-handed alpha
Helix 37	AE1	g	132	148	Right-handed alpha
Helix 38	AE2	g	149	152	Right-handed 310
Helix 39	AE3	h	5	20	Right-handed alpha
Helix 40	AE4	h	30	44	Right-handed alpha
Helix 41	AE5	h	96	101	Right-handed 310
Helix 42	AE6	h	114	121	Right-handed alpha
Helix 43	AE7	i	36	41	Right-handed alpha
Helix 44	AE8	i	46	57	Right-handed alpha
Helix 45	AE9	i	73	93	Right-handed alpha
Helix 46	AF1	i	96	104	Right-handed alpha
Helix 47	AF2	j	14	32	Right-handed alpha
Helix 48	AF3	j	80	88	Right-handed alpha
Helix 49	AF4	k	54	59	Right-handed alpha
Helix 50	AF5	k	59	77	Right-handed alpha
Helix 51	AF6	k	95	103	Right-handed alpha
Helix 52	AF7	l	3	9	Right-handed alpha
Helix 53	AF8	l	127	131	Right-handed 310
Helix 54	AF9	m	14	19	Right-handed alpha
Helix 55	AG1	m	29	37	Right-handed alpha
Helix 56	AG2	m	55	60	Right-handed alpha
Helix 57	AG3	m	67	83	Right-handed alpha
Helix 58	AG4	m	87	93	Right-handed alpha
Helix 59	AG5	n	3	10	Right-handed alpha
Helix 60	AG6	n	41	51	Right-handed alpha
Helix 61	AG7	o	4	15	Right-handed alpha
Helix 62	AG8	o	24	46	Right-handed alpha
Helix 63	AG9	o	49	74	Right-handed alpha
Helix 64	AH1	o	74	85	Right-handed alpha
Helix 65	AH2	p	55	64	Right-handed alpha
Helix 66	AH3	p	68	79	Right-handed alpha
Helix 67	AH4	p	79	89	Right-handed alpha
Helix 68	AH5	r	30	37	Right-handed alpha
Helix 69	AH6	r	46	51	Right-handed alpha
Helix 70	AH7	r	53	70	Right-handed alpha
Helix 71	AH8	s	14	25	Right-handed alpha
Helix 72	AH9	s	41	45	Right-handed 310
Helix 73	AI1	s	78	83	Right-handed 310
Helix 74	AI2	t	6	38	Right-handed alpha
Helix 75	AI3	t	46	63	Right-handed alpha
Helix 76	AI4	t	67	80	Right-handed alpha
Helix 77	AI5	A	3	24	Right-handed alpha
Helix 78	AI6	A	58	82	Right-handed alpha
Helix 79	AI7	A	96	105	Right-handed alpha
Helix 80	AI8	A	107	116	Right-handed alpha

There are 25 sheets in PDB entry 8BYV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	69	70	first strand
Strand 2	b	91	92	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	161	163	first strand
Strand 2	b	183	187	parallel
Strand 3	b	198	201	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	54	58	first strand
Strand 2	c	63	69	anti-parallel
Strand 3	c	99	100	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	54	58	first strand
Strand 2	c	63	69	anti-parallel
Strand 3	c	103	104	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	163	167	first strand
Strand 2	c	147	154	anti-parallel
Strand 3	c	195	202	anti-parallel
Strand 4	c	181	183	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	163	167	first strand
Strand 2	c	147	154	anti-parallel
Strand 3	c	195	202	anti-parallel
Strand 4	c	186	188	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	124	125	first strand
Strand 2	d	119	121	anti-parallel
Strand 3	d	138	141	anti-parallel
Strand 4	d	173	175	anti-parallel
Strand 5	d	166	168	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	12	21	first strand
Strand 2	e	32	40	anti-parallel
Strand 3	e	45	53	anti-parallel
Strand 4	e	72	73	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	85	89	first strand
Strand 2	e	92	98	anti-parallel
Strand 3	e	123	129	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	36	45	first strand
Strand 2	f	59	67	anti-parallel
Strand 3	f	2	10	anti-parallel
Strand 4	f	86	91	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	74	76	first strand
Strand 2	g	87	89	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	24	28	first strand
Strand 2	h	59	64	anti-parallel
Strand 3	h	46	52	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	76	79	first strand
Strand 2	h	125	132	anti-parallel
Strand 3	h	88	89	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	h	76	79	first strand
Strand 2	h	125	132	anti-parallel
Strand 3	h	103	108	anti-parallel
Strand 4	h	111	113	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	i	8	14	first strand
Strand 2	i	17	23	anti-parallel
Strand 3	i	65	70	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	36	41	first strand
Strand 2	j	72	77	anti-parallel
Strand 3	j	5	10	anti-parallel
Strand 4	j	99	100	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	j	49	52	first strand
Strand 2	j	62	65	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	k	43	46	first strand
Strand 2	k	30	36	anti-parallel
Strand 3	k	19	25	anti-parallel
Strand 4	k	84	87	parallel
Strand 5	k	110	112	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	27	29	first strand
Strand 2	l	34	36	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	l	92	95	first strand
Strand 2	l	43	53	anti-parallel
Strand 3	l	63	70	anti-parallel
Strand 4	l	75	79	anti-parallel
Strand 5	l	106	109	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	n	33	34	first strand
Strand 2	n	39	40	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	p	35	36	first strand
Strand 2	p	18	24	anti-parallel
Strand 3	p	3	9	anti-parallel
Strand 4	p	66	67	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	q	9	14	first strand
Strand 2	q	22	32	anti-parallel
Strand 3	q	39	49	anti-parallel
Strand 4	q	73	82	parallel
Strand 5	q	60	70	anti-parallel
Strand 6	q	9	14	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	s	48	51	first strand
Strand 2	s	58	61	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	35	40	first strand
Strand 2	A	46	52	anti-parallel
Strand 3	A	89	94	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BYV

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BYV