Analysis of interatomic Contacts of Structural Units in PDB entry:
8BZ4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8BZ4 entry

There are 2 chains in PDB entry 8BZ4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 18	LEU 623
B	ILE 21	LEU 623

There are 50 helices in PDB entry 8BZ4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	34	Right-handed 310
Helix 2	AA2	A	35	44	Right-handed alpha
Helix 3	AA3	A	48	50	Right-handed 310
Helix 4	AA4	A	64	74	Right-handed alpha
Helix 5	AA5	A	90	101	Right-handed alpha
Helix 6	AA6	A	118	131	Right-handed alpha
Helix 7	AA7	A	158	168	Right-handed 310
Helix 8	AA8	A	178	184	Right-handed alpha
Helix 9	AA9	A	196	207	Right-handed alpha
Helix 10	AB1	A	237	256	Right-handed alpha
Helix 11	AB2	A	258	273	Right-handed alpha
Helix 12	AB3	A	274	278	Right-handed 310
Helix 13	AB4	A	279	284	Right-handed 310
Helix 14	AB5	A	286	305	Right-handed alpha
Helix 15	AB6	A	306	313	Right-handed 310
Helix 16	AB7	A	314	327	Right-handed alpha
Helix 17	AB8	A	328	340	Right-handed alpha
Helix 18	AB9	A	388	393	Right-handed alpha
Helix 19	AC1	A	394	395	Right-handed 310
Helix 20	AC2	A	396	401	Right-handed 310
Helix 21	AC3	A	402	406	Right-handed 310
Helix 22	AC4	A	454	459	Right-handed 310
Helix 23	AC5	A	461	466	Right-handed 310
Helix 24	AC6	A	523	529	Right-handed alpha
Helix 25	AC7	A	531	535	Right-handed 310
Helix 26	AC8	B	35	43	Right-handed alpha
Helix 27	AC9	B	48	52	Right-handed 310
Helix 28	AD1	B	67	76	Right-handed alpha
Helix 29	AD2	B	92	101	Right-handed alpha
Helix 30	AD3	B	118	129	Right-handed alpha
Helix 31	AD4	B	150	154	Right-handed 310
Helix 32	AD5	B	158	162	Right-handed 310
Helix 33	AD6	B	163	168	Right-handed 310
Helix 34	AD7	B	178	185	Right-handed alpha
Helix 35	AD8	B	196	208	Right-handed alpha
Helix 36	AD9	B	237	256	Right-handed alpha
Helix 37	AE1	B	258	273	Right-handed alpha
Helix 38	AE2	B	274	278	Right-handed 310
Helix 39	AE3	B	279	284	Right-handed 310
Helix 40	AE4	B	286	304	Right-handed alpha
Helix 41	AE5	B	306	313	Right-handed 310
Helix 42	AE6	B	314	327	Right-handed alpha
Helix 43	AE7	B	328	340	Right-handed alpha
Helix 44	AE8	B	388	394	Right-handed alpha
Helix 45	AE9	B	396	401	Right-handed 310
Helix 46	AF1	B	402	406	Right-handed 310
Helix 47	AF2	B	454	458	Right-handed 310
Helix 48	AF3	B	461	466	Right-handed 310
Helix 49	AF4	B	523	529	Right-handed alpha
Helix 50	AF5	B	531	535	Right-handed 310

There are 14 sheets in PDB entry 8BZ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	79	83	first strand
Strand 2	A	52	58	parallel
Strand 3	A	21	27	parallel
Strand 4	A	105	108	parallel
Strand 5	A	175	177	anti-parallel
Strand 6	A	134	141	anti-parallel
Strand 7	A	212	223	parallel
Strand 8	A	114	115	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	354	first strand
Strand 2	A	357	368	anti-parallel
Strand 3	A	442	453	anti-parallel
Strand 4	A	376	379	anti-parallel
Strand 5	A	382	384	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	342	354	first strand
Strand 2	A	357	368	anti-parallel
Strand 3	A	442	453	anti-parallel
Strand 4	A	430	439	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	425	first strand
Strand 2	A	410	417	anti-parallel
Strand 3	A	467	477	anti-parallel
Strand 4	A	480	485	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	423	425	first strand
Strand 2	A	410	417	anti-parallel
Strand 3	A	467	477	anti-parallel
Strand 4	A	513	517	anti-parallel
Strand 5	A	502	507	anti-parallel
Strand 6	A	493	498	anti-parallel
Strand 7	A	552	554	parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	538	first strand
Strand 2	A	543	547	anti-parallel
Strand 3	A	589	594	anti-parallel
Strand 4	A	576	584	anti-parallel
Strand 5	A	557	567	anti-parallel
Strand 6	A	603	610	anti-parallel
Strand 7	A	613	614	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	538	first strand
Strand 2	A	543	547	anti-parallel
Strand 3	A	589	594	anti-parallel
Strand 4	A	576	584	anti-parallel
Strand 5	A	557	567	anti-parallel
Strand 6	A	603	610	anti-parallel
Strand 7	A	619	622	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	57	first strand
Strand 2	B	22	26	parallel
Strand 3	B	105	108	parallel
Strand 4	B	175	177	anti-parallel
Strand 5	B	134	141	anti-parallel
Strand 6	B	212	223	parallel
Strand 7	B	114	115	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	354	first strand
Strand 2	B	357	368	anti-parallel
Strand 3	B	442	453	anti-parallel
Strand 4	B	376	379	anti-parallel
Strand 5	B	382	385	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	342	354	first strand
Strand 2	B	357	368	anti-parallel
Strand 3	B	442	453	anti-parallel
Strand 4	B	429	439	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	425	first strand
Strand 2	B	410	417	anti-parallel
Strand 3	B	467	477	anti-parallel
Strand 4	B	480	485	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	423	425	first strand
Strand 2	B	410	417	anti-parallel
Strand 3	B	467	477	anti-parallel
Strand 4	B	513	517	anti-parallel
Strand 5	B	501	507	anti-parallel
Strand 6	B	493	498	anti-parallel
Strand 7	B	552	554	parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	537	first strand
Strand 2	B	543	547	anti-parallel
Strand 3	B	588	594	anti-parallel
Strand 4	B	576	585	anti-parallel
Strand 5	B	557	567	anti-parallel
Strand 6	B	602	610	anti-parallel
Strand 7	B	613	614	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	537	first strand
Strand 2	B	543	547	anti-parallel
Strand 3	B	588	594	anti-parallel
Strand 4	B	576	585	anti-parallel
Strand 5	B	557	567	anti-parallel
Strand 6	B	602	610	anti-parallel
Strand 7	B	619	623	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8BZ4

Analysis of interatomic Contacts of Structural Units in PDB entry:
8BZ4