Analysis of interatomic Contacts of Structural Units in PDB entry:
8BZO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8BZO entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 8BZO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 14TYR 159
A
 HIS 161ARG 297
B
 VAL 175LEU 432
C
 GLU 22ARG 93
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 28 helices in PDB entry 8BZO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 55Right-handed alpha
Helix 2
AA2
A
87 94Right-handed alpha
Helix 3
AA3
A
100 121Right-handed alpha
Helix 4
AA4
A
165 169Right-handed 310
Helix 5
AA5
A
170 176Right-handed alpha
Helix 6
AA6
A
182 199Right-handed alpha
Helix 7
AA7
A
207 220Right-handed alpha
Helix 8
AA8
A
247 252Right-handed alpha
Helix 9
AA9
A
258 267Right-handed alpha
Helix 10
AB1
A
276 281Right-handed alpha
Helix 11
AB2
B
178 190Right-handed alpha
Helix 12
AB3
B
207 224Right-handed alpha
Helix 13
AB4
B
228 243Right-handed alpha
Helix 14
AB5
B
252 269Right-handed alpha
Helix 15
AB6
B
274 282Right-handed alpha
Helix 16
AB7
B
287 292Right-handed alpha
Helix 17
AB8
B
294 302Right-handed alpha
Helix 18
AB9
B
310 320Right-handed alpha
Helix 19
AC1
B
331 343Right-handed alpha
Helix 20
AC2
B
351 368Right-handed alpha
Helix 21
AC3
B
374 378Right-handed 310
Helix 22
AC4
B
387 401Right-handed alpha
Helix 23
AC5
B
402 404Right-handed 310
Helix 24
AC6
B
408 415Right-handed alpha
Helix 25
AC7
B
416 419Right-handed 310
Helix 26
AC8
B
420 424Right-handed 310
Helix 27
AC9
C
37 52Right-handed alpha
Helix 28
AD1
C
85 90Right-handed 310
Back to top of page

There are 3 sheets in PDB entry 8BZO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 22first strand
Strand 2
C
75 79anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 36first strand
Strand 2
A
75 81anti-parallel
Strand 3
A
66 71anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
85 86first strand
Strand 2
A
133 135anti-parallel
Strand 3
A
141 143anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il