Analysis of interatomic Contacts of Structural Units in PDB entry:
8C02


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C02 entry

There are 2 chains in PDB entry 8C02 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 18LYS 549
B
 VAL 4ALA 149
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 8C02. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 22Right-handed 310
Helix 2
AA2
A
23 54Right-handed alpha
Helix 3
AA3
A
57 86Right-handed alpha
Helix 4
AA4
A
87 116Right-handed alpha
Helix 5
AA5
A
116 122Right-handed alpha
Helix 6
AA6
A
127 164Right-handed alpha
Helix 7
AA7
A
166 199Right-handed alpha
Helix 8
AA8
A
200 230Right-handed alpha
Helix 9
AA9
A
231 236Right-handed alpha
Helix 10
AB1
A
288 305Right-handed alpha
Helix 11
AB2
A
307 318Right-handed alpha
Helix 12
AB3
A
331 336Right-handed alpha
Helix 13
AB4
A
338 367Right-handed alpha
Helix 14
AB5
A
368 393Right-handed alpha
Helix 15
AB6
A
451 483Right-handed alpha
Helix 16
AB7
A
488 514Right-handed alpha
Helix 17
AB8
A
519 546Right-handed alpha
Helix 18
AB9
B
89 93Right-handed 310
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There are 3 sheets in PDB entry 8C02. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 9first strand
Strand 2
B
19 26anti-parallel
Strand 3
B
80 86anti-parallel
Strand 4
B
70 75anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 15first strand
Strand 2
B
117 148parallel
Strand 3
B
94 104anti-parallel
Strand 4
B
36 41anti-parallel
Strand 5
B
48 53anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 15first strand
Strand 2
B
117 148parallel
Strand 3
B
94 104anti-parallel
Strand 4
B
109 113anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il