Analysis of interatomic Contacts of Structural Units in PDB entry:
8C05


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C05 entry

There is 1 chain in PDB entry 8C05 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4ARG 312
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8C05. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 13Right-handed alpha
Helix 2
AA2
A
34 42Right-handed alpha
Helix 3
AA3
A
44 49Right-handed alpha
Helix 4
AA4
A
52 57Right-handed 310
Helix 5
AA5
A
62 75Right-handed alpha
Helix 6
AA6
A
119 130Right-handed alpha
Helix 7
AA7
A
139 146Right-handed alpha
Helix 8
AA8
A
147 149Right-handed 310
Helix 9
AA9
A
157 176Right-handed alpha
Helix 10
AB1
A
188 196Right-handed alpha
Helix 11
AB2
A
197 213Right-handed alpha
Helix 12
AB3
A
239 258Right-handed alpha
Helix 13
AB4
A
279 284Right-handed alpha
Helix 14
AB5
A
287 304Right-handed alpha
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There are 2 sheets in PDB entry 8C05. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
30 33first strand
Strand 2
A
17 22anti-parallel
Strand 3
A
107 118anti-parallel
Strand 4
A
92 104anti-parallel
Strand 5
A
79 86anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 225first strand
Strand 2
A
230 236anti-parallel
Strand 3
A
179 186anti-parallel
Strand 4
A
271 278anti-parallel
Strand 5
A
308 310parallel
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