Analysis of interatomic Contacts of Structural Units in PDB entry:
8C06

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C06 entry

There are 6 chains in PDB entry 8C06 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 1523
B	ASN 1773	THR 2793
D	MET 1	PRO 1523
E	ASN 1773	THR 2793
F	LEU 1691	ASN 1720
G	LEU 1691	ASN 1720

There are146 helices in PDB entry 8C06. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	31	Right-handed alpha
Helix 2	AA2	A	42	46	Right-handed 310
Helix 3	AA3	A	413	418	Right-handed alpha
Helix 4	AA4	A	449	452	Right-handed 310
Helix 5	AA5	A	465	469	Right-handed 310
Helix 6	AA6	A	498	500	Right-handed 310
Helix 7	AA7	A	501	506	Right-handed alpha
Helix 8	AA8	A	552	555	Right-handed 310
Helix 9	AA9	A	787	793	Right-handed alpha
Helix 10	AB1	A	795	799	Right-handed 310
Helix 11	AB2	A	874	882	Right-handed alpha
Helix 12	AB3	A	884	903	Right-handed alpha
Helix 13	AB4	A	905	913	Right-handed alpha
Helix 14	AB5	A	921	930	Right-handed alpha
Helix 15	AB6	A	935	942	Right-handed alpha
Helix 16	AB7	A	1080	1094	Right-handed alpha
Helix 17	AB8	A	1098	1100	Right-handed 310
Helix 18	AB9	A	1101	1107	Right-handed alpha
Helix 19	AC1	A	1115	1123	Right-handed alpha
Helix 20	AC2	A	1125	1141	Right-handed alpha
Helix 21	AC3	A	1149	1159	Right-handed alpha
Helix 22	AC4	A	1164	1167	Right-handed 310
Helix 23	AC5	A	1168	1175	Right-handed alpha
Helix 24	AC6	A	1208	1214	Right-handed alpha
Helix 25	AC7	A	1247	1260	Right-handed alpha
Helix 26	AC8	A	1274	1290	Right-handed alpha
Helix 27	AC9	A	1291	1293	Right-handed 310
Helix 28	AD1	A	1324	1333	Right-handed alpha
Helix 29	AD2	A	1337	1344	Right-handed alpha
Helix 30	AD3	A	1364	1374	Right-handed alpha
Helix 31	AD4	A	1377	1389	Right-handed alpha
Helix 32	AD5	A	1395	1410	Right-handed alpha
Helix 33	AD6	A	1416	1443	Right-handed alpha
Helix 34	AD7	A	1454	1467	Right-handed alpha
Helix 35	AD8	A	1467	1488	Right-handed alpha
Helix 36	AD9	A	1503	1515	Right-handed alpha
Helix 37	AE1	B	1776	1800	Right-handed alpha
Helix 38	AE2	B	1804	1809	Right-handed alpha
Helix 39	AE3	B	1820	1835	Right-handed alpha
Helix 40	AE4	B	1836	1861	Right-handed alpha
Helix 41	AE5	B	1873	1876	Right-handed 310
Helix 42	AE6	B	1877	1884	Right-handed alpha
Helix 43	AE7	B	1912	1927	Right-handed alpha
Helix 44	AE8	B	1940	1943	Right-handed 310
Helix 45	AE9	B	1944	1964	Right-handed alpha
Helix 46	AF1	B	2048	2053	Right-handed alpha
Helix 47	AF2	B	2054	2057	Right-handed 310
Helix 48	AF3	B	2063	2068	Right-handed alpha
Helix 49	AF4	B	2093	2097	Right-handed 310
Helix 50	AF5	B	2103	2116	Right-handed alpha
Helix 51	AF6	B	2165	2169	Right-handed 310
Helix 52	AF7	B	2181	2189	Right-handed alpha
Helix 53	AF8	B	2189	2200	Right-handed alpha
Helix 54	AF9	B	2203	2207	Right-handed 310
Helix 55	AG1	B	2210	2215	Right-handed alpha
Helix 56	AG2	B	2217	2236	Right-handed alpha
Helix 57	AG3	B	2248	2262	Right-handed alpha
Helix 58	AG4	B	2289	2305	Right-handed alpha
Helix 59	AG5	B	2522	2542	Right-handed alpha
Helix 60	AG6	B	2551	2560	Right-handed alpha
Helix 61	AG7	B	2564	2571	Right-handed 310
Helix 62	AG8	B	2572	2586	Right-handed alpha
Helix 63	AG9	B	2591	2596	Right-handed alpha
Helix 64	AH1	B	2620	2624	Right-handed 310
Helix 65	AH2	B	2630	2645	Right-handed alpha
Helix 66	AH3	B	2647	2662	Right-handed alpha
Helix 67	AH4	B	2671	2680	Right-handed alpha
Helix 68	AH5	B	2686	2694	Right-handed alpha
Helix 69	AH6	B	2709	2720	Right-handed alpha
Helix 70	AH7	B	2722	2735	Right-handed alpha
Helix 71	AH8	B	2742	2746	Right-handed 310
Helix 72	AH9	B	2779	2793	Right-handed alpha
Helix 73	AI1	D	14	31	Right-handed alpha
Helix 74	AI2	D	42	46	Right-handed 310
Helix 75	AI3	D	413	418	Right-handed alpha
Helix 76	AI4	D	449	452	Right-handed 310
Helix 77	AI5	D	465	469	Right-handed 310
Helix 78	AI6	D	498	500	Right-handed 310
Helix 79	AI7	D	501	506	Right-handed alpha
Helix 80	AI8	D	552	555	Right-handed 310
Helix 81	AI9	D	787	793	Right-handed alpha
Helix 82	AJ1	D	795	799	Right-handed 310
Helix 83	AJ2	D	874	882	Right-handed alpha
Helix 84	AJ3	D	884	903	Right-handed alpha
Helix 85	AJ4	D	905	913	Right-handed alpha
Helix 86	AJ5	D	921	930	Right-handed alpha
Helix 87	AJ6	D	935	942	Right-handed alpha
Helix 88	AJ7	D	1080	1094	Right-handed alpha
Helix 89	AJ8	D	1098	1100	Right-handed 310
Helix 90	AJ9	D	1101	1107	Right-handed alpha
Helix 91	AK1	D	1115	1123	Right-handed alpha
Helix 92	AK2	D	1125	1141	Right-handed alpha
Helix 93	AK3	D	1149	1159	Right-handed alpha
Helix 94	AK4	D	1164	1167	Right-handed 310
Helix 95	AK5	D	1168	1175	Right-handed alpha
Helix 96	AK6	D	1208	1214	Right-handed alpha
Helix 97	AK7	D	1247	1260	Right-handed alpha
Helix 98	AK8	D	1274	1290	Right-handed alpha
Helix 99	AK9	D	1291	1293	Right-handed 310
Helix 100	AL1	D	1324	1333	Right-handed alpha
Helix 101	AL2	D	1337	1344	Right-handed alpha
Helix 102	AL3	D	1364	1374	Right-handed alpha
Helix 103	AL4	D	1377	1389	Right-handed alpha
Helix 104	AL5	D	1395	1410	Right-handed alpha
Helix 105	AL6	D	1416	1443	Right-handed alpha
Helix 106	AL7	D	1454	1467	Right-handed alpha
Helix 107	AL8	D	1467	1488	Right-handed alpha
Helix 108	AL9	D	1503	1515	Right-handed alpha
Helix 109	AM1	E	1776	1800	Right-handed alpha
Helix 110	AM2	E	1804	1809	Right-handed alpha
Helix 111	AM3	E	1820	1835	Right-handed alpha
Helix 112	AM4	E	1836	1861	Right-handed alpha
Helix 113	AM5	E	1873	1876	Right-handed 310
Helix 114	AM6	E	1877	1884	Right-handed alpha
Helix 115	AM7	E	1912	1927	Right-handed alpha
Helix 116	AM8	E	1940	1943	Right-handed 310
Helix 117	AM9	E	1944	1964	Right-handed alpha
Helix 118	AN1	E	2048	2053	Right-handed alpha
Helix 119	AN2	E	2054	2057	Right-handed 310
Helix 120	AN3	E	2063	2068	Right-handed alpha
Helix 121	AN4	E	2093	2097	Right-handed 310
Helix 122	AN5	E	2103	2116	Right-handed alpha
Helix 123	AN6	E	2165	2169	Right-handed 310
Helix 124	AN7	E	2181	2189	Right-handed alpha
Helix 125	AN8	E	2189	2200	Right-handed alpha
Helix 126	AN9	E	2203	2207	Right-handed 310
Helix 127	AO1	E	2210	2215	Right-handed alpha
Helix 128	AO2	E	2217	2236	Right-handed alpha
Helix 129	AO3	E	2248	2262	Right-handed alpha
Helix 130	AO4	E	2289	2305	Right-handed alpha
Helix 131	AO5	E	2522	2542	Right-handed alpha
Helix 132	AO6	E	2551	2560	Right-handed alpha
Helix 133	AO7	E	2564	2571	Right-handed 310
Helix 134	AO8	E	2572	2586	Right-handed alpha
Helix 135	AO9	E	2591	2596	Right-handed alpha
Helix 136	AP1	E	2620	2624	Right-handed 310
Helix 137	AP2	E	2630	2645	Right-handed alpha
Helix 138	AP3	E	2647	2662	Right-handed alpha
Helix 139	AP4	E	2671	2680	Right-handed alpha
Helix 140	AP5	E	2686	2694	Right-handed alpha
Helix 141	AP6	E	2709	2720	Right-handed alpha
Helix 142	AP7	E	2722	2735	Right-handed alpha
Helix 143	AP8	E	2742	2746	Right-handed 310
Helix 144	AP9	E	2779	2793	Right-handed alpha
Helix 145	AQ1	F	1706	1710	Right-handed 310
Helix 146	AQ2	G	1706	1710	Right-handed 310

There are 28 sheets in PDB entry 8C06. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	2	10	first strand
Strand 2	A	863	872	anti-parallel
Strand 3	A	841	850	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	53	first strand
Strand 2	A	57	62	anti-parallel
Strand 3	A	67	73	anti-parallel
Strand 4	A	355	356	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	53	first strand
Strand 2	A	57	62	anti-parallel
Strand 3	A	67	73	anti-parallel
Strand 4	A	361	362	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	371	376	first strand
Strand 2	A	380	385	anti-parallel
Strand 3	A	390	394	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	429	first strand
Strand 2	A	433	438	anti-parallel
Strand 3	A	443	447	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	475	478	first strand
Strand 2	A	483	486	anti-parallel
Strand 3	A	491	496	anti-parallel
Strand 4	A	731	737	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	649	652	first strand
Strand 2	A	571	576	anti-parallel
Strand 3	A	557	560	anti-parallel
Strand 4	A	547	550	anti-parallel
Strand 5	A	656	660	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	745	751	first strand
Strand 2	A	756	762	anti-parallel
Strand 3	A	765	771	anti-parallel
Strand 4	A	778	783	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	800	802	first strand
Strand 2	A	811	813	anti-parallel
Strand 3	A	819	820	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1194	1196	first strand
Strand 2	A	1221	1223	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2238	2244	first strand
Strand 2	B	2274	2281	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2505	2506	first strand
Strand 2	B	2515	2516	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2603	2604	first strand
Strand 2	B	2615	2616	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2751	2755	first strand
Strand 2	B	2771	2775	parallel
Strand 3	B	2764	2766	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	2	10	first strand
Strand 2	D	863	872	anti-parallel
Strand 3	D	841	850	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	53	first strand
Strand 2	D	57	62	anti-parallel
Strand 3	D	67	73	anti-parallel
Strand 4	D	355	356	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	53	first strand
Strand 2	D	57	62	anti-parallel
Strand 3	D	67	73	anti-parallel
Strand 4	D	361	362	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	371	376	first strand
Strand 2	D	380	385	anti-parallel
Strand 3	D	390	394	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	424	429	first strand
Strand 2	D	433	438	anti-parallel
Strand 3	D	443	447	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	475	478	first strand
Strand 2	D	483	486	anti-parallel
Strand 3	D	491	496	anti-parallel
Strand 4	D	731	737	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	649	652	first strand
Strand 2	D	571	576	anti-parallel
Strand 3	D	557	560	anti-parallel
Strand 4	D	547	550	anti-parallel
Strand 5	D	656	660	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	745	751	first strand
Strand 2	D	756	762	anti-parallel
Strand 3	D	765	771	anti-parallel
Strand 4	D	778	783	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	800	802	first strand
Strand 2	D	811	813	anti-parallel
Strand 3	D	819	820	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1194	1196	first strand
Strand 2	D	1221	1223	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2238	2244	first strand
Strand 2	E	2274	2281	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2505	2506	first strand
Strand 2	E	2515	2516	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2603	2604	first strand
Strand 2	E	2615	2616	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	2751	2755	first strand
Strand 2	E	2771	2775	parallel
Strand 3	E	2764	2766	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C06

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C06