Analysis of interatomic Contacts of Structural Units in PDB entry:
8C07

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C07 entry

There are 4 chains in PDB entry 8C07 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 2016	PHE 2798
I	MET 1	ARG 72
K	MET 1	GLY 75
J	ILE 180	ARG 226

There are 28 helices in PDB entry 8C07. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	2026	2030	Right-handed 310
Helix 2	AA2	B	2043	2048	Right-handed alpha
Helix 3	AA3	B	2048	2053	Right-handed alpha
Helix 4	AA4	B	2063	2068	Right-handed alpha
Helix 5	AA5	B	2217	2236	Right-handed alpha
Helix 6	AA6	B	2248	2259	Right-handed alpha
Helix 7	AA7	B	2289	2305	Right-handed alpha
Helix 8	AA8	B	2524	2531	Right-handed alpha
Helix 9	AA9	B	2532	2542	Right-handed alpha
Helix 10	AB1	B	2551	2560	Right-handed alpha
Helix 11	AB2	B	2564	2571	Right-handed 310
Helix 12	AB3	B	2572	2586	Right-handed alpha
Helix 13	AB4	B	2594	2599	Right-handed alpha
Helix 14	AB5	B	2627	2629	Right-handed 310
Helix 15	AB6	B	2630	2645	Right-handed alpha
Helix 16	AB7	B	2647	2660	Right-handed alpha
Helix 17	AB8	B	2671	2681	Right-handed alpha
Helix 18	AB9	B	2686	2693	Right-handed alpha
Helix 19	AC1	B	2709	2720	Right-handed alpha
Helix 20	AC2	B	2722	2735	Right-handed alpha
Helix 21	AC3	B	2742	2746	Right-handed 310
Helix 22	AC4	B	2780	2791	Right-handed alpha
Helix 23	AC5	I	22	33	Right-handed alpha
Helix 24	AC6	I	37	39	Right-handed 310
Helix 25	AC7	K	22	34	Right-handed alpha
Helix 26	AC8	J	186	197	Right-handed alpha
Helix 27	AC9	J	201	212	Right-handed alpha
Helix 28	AD1	J	215	225	Right-handed alpha

There are 6 sheets in PDB entry 8C07. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2238	2243	first strand
Strand 2	B	2274	2280	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2505	2506	first strand
Strand 2	B	2515	2516	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2603	2605	first strand
Strand 2	B	2613	2616	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	2697	2698	first strand
Strand 2	B	2751	2754	parallel
Strand 3	B	2771	2774	parallel
Strand 4	B	2764	2766	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	16	first strand
Strand 2	I	2	6	anti-parallel
Strand 3	I	66	71	parallel
Strand 4	I	41	44	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	6	first strand
Strand 2	K	65	71	parallel
Strand 3	K	41	45	anti-parallel
Strand 4	K	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C07

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C07