Analysis of interatomic Contacts of Structural Units in PDB entry:
8C08


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C08 entry

There are 2 chains in PDB entry 8C08 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 537THR 810
B
 VAL 536THR 810
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 8C08. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
541 543Right-handed 310
Helix 2
AA2
A
584 589Right-handed 310
Helix 3
AA3
A
590 604Right-handed alpha
Helix 4
AA4
A
633 641Right-handed alpha
Helix 5
AA5
A
642 645Right-handed 310
Helix 6
AA6
A
646 667Right-handed alpha
Helix 7
AA7
A
708 716Right-handed alpha
Helix 8
AA8
A
720 725Right-handed alpha
Helix 9
AA9
A
726 730Right-handed 310
Helix 10
AB1
A
731 748Right-handed alpha
Helix 11
AB2
A
758 768Right-handed alpha
Helix 12
AB3
A
780 788Right-handed alpha
Helix 13
AB4
A
791 795Right-handed 310
Helix 14
AB5
A
797 808Right-handed alpha
Helix 15
AB6
B
541 543Right-handed 310
Helix 16
AB7
B
587 589Right-handed 310
Helix 17
AB8
B
590 604Right-handed alpha
Helix 18
AB9
B
633 641Right-handed alpha
Helix 19
AC1
B
646 668Right-handed alpha
Helix 20
AC2
B
708 715Right-handed alpha
Helix 21
AC3
B
720 726Right-handed alpha
Helix 22
AC4
B
727 730Right-handed 310
Helix 23
AC5
B
731 748Right-handed alpha
Helix 24
AC6
B
758 768Right-handed alpha
Helix 25
AC7
B
780 788Right-handed alpha
Helix 26
AC8
B
791 795Right-handed 310
Helix 27
AC9
B
797 808Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8C08. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 554first strand
Strand 2
A
557 564anti-parallel
Strand 3
A
576 583anti-parallel
Strand 4
A
622 627anti-parallel
Strand 5
A
612 616anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
679 683first strand
Strand 2
A
694 697anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
538 539first strand
Strand 2
B
612 616parallel
Strand 3
B
623 626anti-parallel
Strand 4
B
575 583anti-parallel
Strand 5
B
557 565anti-parallel
Strand 6
B
545 554anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
679 683first strand
Strand 2
B
694 697anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il