Analysis of interatomic Contacts of Structural Units in PDB entry:
8C0E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C0E entry

There are 8 chains in PDB entry 8C0E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 39	GLY 337
B	ILE 39	GLY 337
C	ILE 39	GLY 337
D	ILE 39	GLY 337
E	ILE 39	GLY 337
F	ILE 39	GLY 337
G	ILE 39	GLY 337
H	ILE 39	GLY 337

There are 97 helices in PDB entry 8C0E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	54	Right-handed alpha
Helix 2	AA2	A	69	72	Right-handed 310
Helix 3	AA3	A	73	84	Right-handed alpha
Helix 4	AA4	A	85	92	Right-handed alpha
Helix 5	AA5	A	99	113	Right-handed alpha
Helix 6	AA6	A	114	125	Right-handed alpha
Helix 7	AA7	A	125	130	Right-handed alpha
Helix 8	AA8	A	135	150	Right-handed alpha
Helix 9	AA9	A	171	241	Right-handed alpha
Helix 10	AB1	A	264	278	Right-handed alpha
Helix 11	AB2	A	283	298	Right-handed alpha
Helix 12	AB3	A	325	337	Right-handed alpha
Helix 13	AB4	B	40	54	Right-handed alpha
Helix 14	AB5	B	69	72	Right-handed 310
Helix 15	AB6	B	73	84	Right-handed alpha
Helix 16	AB7	B	85	92	Right-handed alpha
Helix 17	AB8	B	99	113	Right-handed alpha
Helix 18	AB9	B	114	125	Right-handed alpha
Helix 19	AC1	B	125	130	Right-handed alpha
Helix 20	AC2	B	135	150	Right-handed alpha
Helix 21	AC3	B	171	241	Right-handed alpha
Helix 22	AC4	B	267	278	Right-handed alpha
Helix 23	AC5	B	283	298	Right-handed alpha
Helix 24	AC6	B	325	337	Right-handed alpha
Helix 25	AC7	C	40	54	Right-handed alpha
Helix 26	AC8	C	69	72	Right-handed 310
Helix 27	AC9	C	73	84	Right-handed alpha
Helix 28	AD1	C	85	92	Right-handed alpha
Helix 29	AD2	C	99	113	Right-handed alpha
Helix 30	AD3	C	114	125	Right-handed alpha
Helix 31	AD4	C	125	130	Right-handed alpha
Helix 32	AD5	C	135	150	Right-handed alpha
Helix 33	AD6	C	171	241	Right-handed alpha
Helix 34	AD7	C	264	278	Right-handed alpha
Helix 35	AD8	C	283	298	Right-handed alpha
Helix 36	AD9	C	325	337	Right-handed alpha
Helix 37	AE1	D	40	54	Right-handed alpha
Helix 38	AE2	D	69	72	Right-handed 310
Helix 39	AE3	D	73	84	Right-handed alpha
Helix 40	AE4	D	85	92	Right-handed alpha
Helix 41	AE5	D	99	113	Right-handed alpha
Helix 42	AE6	D	114	125	Right-handed alpha
Helix 43	AE7	D	125	130	Right-handed alpha
Helix 44	AE8	D	135	150	Right-handed alpha
Helix 45	AE9	D	171	241	Right-handed alpha
Helix 46	AF1	D	266	278	Right-handed alpha
Helix 47	AF2	D	283	298	Right-handed alpha
Helix 48	AF3	D	325	337	Right-handed alpha
Helix 49	AF4	E	40	54	Right-handed alpha
Helix 50	AF5	E	69	72	Right-handed 310
Helix 51	AF6	E	73	84	Right-handed alpha
Helix 52	AF7	E	85	92	Right-handed alpha
Helix 53	AF8	E	99	113	Right-handed alpha
Helix 54	AF9	E	114	125	Right-handed alpha
Helix 55	AG1	E	125	130	Right-handed alpha
Helix 56	AG2	E	135	150	Right-handed alpha
Helix 57	AG3	E	171	241	Right-handed alpha
Helix 58	AG4	E	260	263	Right-handed 310
Helix 59	AG5	E	264	278	Right-handed alpha
Helix 60	AG6	E	283	298	Right-handed alpha
Helix 61	AG7	E	325	337	Right-handed alpha
Helix 62	AG8	F	40	54	Right-handed alpha
Helix 63	AG9	F	69	72	Right-handed 310
Helix 64	AH1	F	73	84	Right-handed alpha
Helix 65	AH2	F	85	92	Right-handed alpha
Helix 66	AH3	F	99	113	Right-handed alpha
Helix 67	AH4	F	114	125	Right-handed alpha
Helix 68	AH5	F	125	130	Right-handed alpha
Helix 69	AH6	F	135	150	Right-handed alpha
Helix 70	AH7	F	171	241	Right-handed alpha
Helix 71	AH8	F	265	278	Right-handed alpha
Helix 72	AH9	F	283	298	Right-handed alpha
Helix 73	AI1	F	325	337	Right-handed alpha
Helix 74	AI2	G	40	54	Right-handed alpha
Helix 75	AI3	G	69	72	Right-handed 310
Helix 76	AI4	G	73	84	Right-handed alpha
Helix 77	AI5	G	85	92	Right-handed alpha
Helix 78	AI6	G	99	113	Right-handed alpha
Helix 79	AI7	G	114	125	Right-handed alpha
Helix 80	AI8	G	125	130	Right-handed alpha
Helix 81	AI9	G	135	150	Right-handed alpha
Helix 82	AJ1	G	171	241	Right-handed alpha
Helix 83	AJ2	G	264	278	Right-handed alpha
Helix 84	AJ3	G	283	298	Right-handed alpha
Helix 85	AJ4	G	325	337	Right-handed alpha
Helix 86	AJ5	H	40	54	Right-handed alpha
Helix 87	AJ6	H	69	72	Right-handed 310
Helix 88	AJ7	H	73	84	Right-handed alpha
Helix 89	AJ8	H	85	92	Right-handed alpha
Helix 90	AJ9	H	99	113	Right-handed alpha
Helix 91	AK1	H	114	125	Right-handed alpha
Helix 92	AK2	H	125	130	Right-handed alpha
Helix 93	AK3	H	135	150	Right-handed alpha
Helix 94	AK4	H	171	241	Right-handed alpha
Helix 95	AK5	H	265	278	Right-handed alpha
Helix 96	AK6	H	283	298	Right-handed alpha
Helix 97	AK7	H	325	337	Right-handed alpha

There are 8 sheets in PDB entry 8C0E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	151	153	first strand
Strand 2	A	163	169	anti-parallel
Strand 3	A	58	65	anti-parallel
Strand 4	A	310	313	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	151	153	first strand
Strand 2	B	163	169	anti-parallel
Strand 3	B	58	65	anti-parallel
Strand 4	B	310	313	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	151	153	first strand
Strand 2	C	163	169	anti-parallel
Strand 3	C	58	65	anti-parallel
Strand 4	C	310	313	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	151	153	first strand
Strand 2	D	163	169	anti-parallel
Strand 3	D	58	65	anti-parallel
Strand 4	D	310	313	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	151	153	first strand
Strand 2	E	163	169	anti-parallel
Strand 3	E	58	65	anti-parallel
Strand 4	E	310	313	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	151	153	first strand
Strand 2	F	163	169	anti-parallel
Strand 3	F	58	65	anti-parallel
Strand 4	F	310	313	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	151	153	first strand
Strand 2	G	163	169	anti-parallel
Strand 3	G	58	65	anti-parallel
Strand 4	G	310	313	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	151	153	first strand
Strand 2	H	163	169	anti-parallel
Strand 3	H	58	65	anti-parallel
Strand 4	H	310	313	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C0E

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C0E