Analysis of interatomic Contacts of Structural Units in PDB entry:
8C0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C0J entry

There are 3 chains in PDB entry 8C0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 190GLN 422
B
 GLY 297ARG 427
C
 ASP 190LEU 421
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8C0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
214 233Right-handed alpha
Helix 2
AA2
A
249 260Right-handed alpha
Helix 3
AA3
A
323 356Right-handed alpha
Helix 4
AA4
A
388 396Right-handed alpha
Helix 5
AA5
A
397 419Right-handed alpha
Helix 6
AA6
B
421 425Right-handed 310
Helix 7
AA7
C
214 233Right-handed alpha
Helix 8
AA8
C
249 260Right-handed alpha
Helix 9
AA9
C
325 356Right-handed alpha
Helix 10
AB1
C
388 396Right-handed alpha
Helix 11
AB2
C
397 419Right-handed alpha
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There are 5 sheets in PDB entry 8C0J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
236 240first strand
Strand 2
A
192 198parallel
Strand 3
A
264 271parallel
Strand 4
A
378 385parallel
Strand 5
A
282 285anti-parallel
Strand 6
A
364 365parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
314 316first strand
Strand 2
B
331 334anti-parallel
Strand 3
B
407 414anti-parallel
Strand 4
B
370 380anti-parallel
Strand 5
B
359 367anti-parallel
Strand 6
B
347 355anti-parallel
Strand 7
B
387 388anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
340 342first strand
Strand 2
B
393 397anti-parallel
Strand 3
B
370 380anti-parallel
Strand 4
B
407 414anti-parallel
Strand 5
B
417 419anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 323first strand
Strand 2
B
326 327anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
236 240first strand
Strand 2
C
192 198parallel
Strand 3
C
264 271parallel
Strand 4
C
378 385parallel
Strand 5
C
282 285anti-parallel
Strand 6
C
364 365parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il