Analysis of interatomic Contacts of Structural Units in PDB entry:
8C0P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C0P entry

There are 2 chains in PDB entry 8C0P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 333GLY 584
B
 SER 333ASN 583
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 8C0P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
352 357Right-handed alpha
Helix 2
AA2
A
377 382Right-handed alpha
Helix 3
AA3
A
387 390Right-handed 310
Helix 4
AA4
A
391 402Right-handed alpha
Helix 5
AA5
A
421 425Right-handed 310
Helix 6
AA6
A
429 437Right-handed alpha
Helix 7
AA7
A
438 448Right-handed alpha
Helix 8
AA8
A
450 462Right-handed alpha
Helix 9
AA9
A
484 497Right-handed alpha
Helix 10
AB1
A
502 513Right-handed alpha
Helix 11
AB2
A
564 579Right-handed alpha
Helix 12
AB3
B
352 357Right-handed alpha
Helix 13
AB4
B
379 382Right-handed 310
Helix 14
AB5
B
387 390Right-handed 310
Helix 15
AB6
B
391 402Right-handed alpha
Helix 16
AB7
B
421 425Right-handed 310
Helix 17
AB8
B
429 436Right-handed alpha
Helix 18
AB9
B
438 448Right-handed alpha
Helix 19
AC1
B
450 462Right-handed alpha
Helix 20
AC2
B
484 497Right-handed alpha
Helix 21
AC3
B
502 513Right-handed alpha
Helix 22
AC4
B
564 579Right-handed alpha
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There are 4 sheets in PDB entry 8C0P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
346 349first strand
Strand 2
A
372 376parallel
Strand 3
A
360 367anti-parallel
Strand 4
A
551 560anti-parallel
Strand 5
A
535 547anti-parallel
Strand 6
A
521 532anti-parallel
Strand 7
A
514 517anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
384 385first strand
Strand 2
A
482 483anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
347 350first strand
Strand 2
B
372 376parallel
Strand 3
B
360 367anti-parallel
Strand 4
B
551 560anti-parallel
Strand 5
B
535 547anti-parallel
Strand 6
B
521 532anti-parallel
Strand 7
B
514 517anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
384 385first strand
Strand 2
B
482 483anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il