Analysis of interatomic Contacts of Structural Units in PDB entry:
8C0T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C0T entry

There are 2 chains in PDB entry 8C0T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 11ILE 67
A
 PHE 70ALA 299
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 8 helices in PDB entry 8C0T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 64Right-handed 310
Helix 2
AA2
A
70 74Right-handed 310
Helix 3
AA3
A
81 89Right-handed alpha
Helix 4
AA4
A
151 163Right-handed alpha
Helix 5
AA5
A
171 180Right-handed alpha
Helix 6
AA6
A
181 183Right-handed 310
Helix 7
AA7
A
187 199Right-handed alpha
Helix 8
AA8
A
207 219Right-handed alpha
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There are 2 sheets in PDB entry 8C0T. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
235 245anti-parallel
Strand 3
A
227 229anti-parallel
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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
235 245anti-parallel
Strand 3
A
251 262anti-parallel
Strand 4
A
93 101anti-parallel
Strand 5
A
106 116anti-parallel
Strand 6
A
119 129anti-parallel
Strand 7
A
16 25parallel
Strand 8
A
28 39anti-parallel
Strand 9
A
44 51anti-parallel
Strand 10
A
290 297anti-parallel
Strand 11
A
280 286anti-parallel
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