Analysis of interatomic Contacts of Structural Units in PDB entry:
8C0Z

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C0Z entry

There are 5 chains in PDB entry 8C0Z (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	SER 616
B	MET 1	SER 616
C	MET 1	ALA 158
E	MET 1	ARG 424
F	MET 1	ALA 158

There are 84 helices in PDB entry 8C0Z. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	31	Right-handed alpha
Helix 2	AA2	A	35	45	Right-handed alpha
Helix 3	AA3	A	96	105	Right-handed alpha
Helix 4	AA4	A	140	153	Right-handed alpha
Helix 5	AA5	A	163	168	Right-handed alpha
Helix 6	AA6	A	187	195	Right-handed alpha
Helix 7	AA7	A	213	229	Right-handed alpha
Helix 8	AA8	A	236	242	Right-handed alpha
Helix 9	AA9	A	245	253	Right-handed alpha
Helix 10	AB1	A	268	272	Right-handed 310
Helix 11	AB2	A	273	279	Right-handed alpha
Helix 12	AB3	A	318	322	Right-handed 310
Helix 13	AB4	A	329	337	Right-handed alpha
Helix 14	AB5	A	344	359	Right-handed alpha
Helix 15	AB6	A	361	379	Right-handed alpha
Helix 16	AB7	A	382	387	Right-handed alpha
Helix 17	AB8	A	394	408	Right-handed alpha
Helix 18	AB9	A	411	416	Right-handed alpha
Helix 19	AC1	A	418	426	Right-handed alpha
Helix 20	AC2	A	428	432	Right-handed 310
Helix 21	AC3	A	449	457	Right-handed alpha
Helix 22	AC4	A	469	474	Right-handed alpha
Helix 23	AC5	A	489	507	Right-handed alpha
Helix 24	AC6	A	510	515	Right-handed 310
Helix 25	AC7	A	517	529	Right-handed alpha
Helix 26	AC8	A	534	556	Right-handed alpha
Helix 27	AC9	A	559	563	Right-handed 310
Helix 28	AD1	A	566	572	Right-handed alpha
Helix 29	AD2	A	585	588	Right-handed 310
Helix 30	AD3	A	589	598	Right-handed alpha
Helix 31	AD4	A	606	613	Right-handed alpha
Helix 32	AD5	B	26	31	Right-handed alpha
Helix 33	AD6	B	34	43	Right-handed alpha
Helix 34	AD7	B	96	104	Right-handed alpha
Helix 35	AD8	B	140	153	Right-handed alpha
Helix 36	AD9	B	163	168	Right-handed alpha
Helix 37	AE1	B	187	194	Right-handed alpha
Helix 38	AE2	B	213	231	Right-handed alpha
Helix 39	AE3	B	236	242	Right-handed alpha
Helix 40	AE4	B	245	254	Right-handed alpha
Helix 41	AE5	B	268	272	Right-handed 310
Helix 42	AE6	B	274	278	Right-handed 310
Helix 43	AE7	B	329	337	Right-handed alpha
Helix 44	AE8	B	345	359	Right-handed alpha
Helix 45	AE9	B	361	379	Right-handed alpha
Helix 46	AF1	B	382	387	Right-handed alpha
Helix 47	AF2	B	394	408	Right-handed alpha
Helix 48	AF3	B	411	416	Right-handed alpha
Helix 49	AF4	B	418	426	Right-handed alpha
Helix 50	AF5	B	428	432	Right-handed 310
Helix 51	AF6	B	449	457	Right-handed alpha
Helix 52	AF7	B	469	474	Right-handed alpha
Helix 53	AF8	B	489	507	Right-handed alpha
Helix 54	AF9	B	510	515	Right-handed 310
Helix 55	AG1	B	517	529	Right-handed alpha
Helix 56	AG2	B	534	556	Right-handed alpha
Helix 57	AG3	B	559	563	Right-handed 310
Helix 58	AG4	B	566	572	Right-handed alpha
Helix 59	AG5	B	585	588	Right-handed 310
Helix 60	AG6	B	589	598	Right-handed alpha
Helix 61	AG7	B	606	614	Right-handed alpha
Helix 62	AG8	C	9	12	Right-handed 310
Helix 63	AG9	C	16	27	Right-handed alpha
Helix 64	AH1	C	31	35	Right-handed 310
Helix 65	AH2	C	59	64	Right-handed alpha
Helix 66	AH3	C	91	96	Right-handed alpha
Helix 67	AH4	C	114	119	Right-handed 310
Helix 68	AH5	C	140	152	Right-handed alpha
Helix 69	AH6	E	9	23	Right-handed alpha
Helix 70	AH7	E	44	50	Right-handed alpha
Helix 71	AH8	E	53	58	Right-handed 310
Helix 72	AH9	E	64	69	Right-handed alpha
Helix 73	AI1	E	127	138	Right-handed alpha
Helix 74	AI2	E	151	164	Right-handed alpha
Helix 75	AI3	E	182	197	Right-handed alpha
Helix 76	AI4	E	293	310	Right-handed alpha
Helix 77	AI5	E	341	345	Right-handed 310
Helix 78	AI6	E	382	390	Right-handed alpha
Helix 79	AI7	E	396	404	Right-handed alpha
Helix 80	AI8	E	407	417	Right-handed alpha
Helix 81	AI9	E	418	423	Right-handed 310
Helix 82	AJ1	F	16	27	Right-handed alpha
Helix 83	AJ2	F	59	65	Right-handed alpha
Helix 84	AJ3	F	140	152	Right-handed alpha

There are 22 sheets in PDB entry 8C0Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	10	11	first strand
Strand 2	A	108	112	parallel
Strand 3	A	57	62	anti-parallel
Strand 4	A	76	81	anti-parallel
Strand 5	A	88	93	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	132	first strand
Strand 2	A	119	124	anti-parallel
Strand 3	A	197	202	parallel
Strand 4	A	158	161	anti-parallel
Strand 5	A	176	177	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	434	435	first strand
Strand 2	A	438	439	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	11	first strand
Strand 2	B	108	112	parallel
Strand 3	B	57	62	anti-parallel
Strand 4	B	76	81	anti-parallel
Strand 5	B	88	93	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	132	first strand
Strand 2	B	119	124	anti-parallel
Strand 3	B	197	203	parallel
Strand 4	B	158	161	anti-parallel
Strand 5	B	176	177	anti-parallel
Strand 6	B	181	182	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	305	307	first strand
Strand 2	B	324	326	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	434	435	first strand
Strand 2	B	438	439	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	131	135	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	42	first strand
Strand 2	C	47	51	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	71	first strand
Strand 2	C	80	81	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	104	first strand
Strand 2	C	109	111	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	72	73	first strand
Strand 2	E	27	31	parallel
Strand 3	E	2	6	parallel
Strand 4	E	100	103	parallel
Strand 5	E	271	273	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	82	first strand
Strand 2	E	87	90	anti-parallel
Strand 3	E	95	97	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	107	110	first strand
Strand 2	E	239	242	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	124	first strand
Strand 2	E	233	236	parallel
Strand 3	E	144	147	parallel
Strand 4	E	168	171	parallel
Strand 5	E	199	202	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	206	210	first strand
Strand 2	E	219	223	anti-parallel
Strand 3	E	228	231	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	258	259	first strand
Strand 2	E	278	281	parallel
Strand 3	E	288	289	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	321	326	first strand
Strand 2	E	329	335	anti-parallel
Strand 3	E	369	375	anti-parallel
Strand 4	E	358	364	anti-parallel
Strand 5	E	347	353	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	131	135	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	38	42	first strand
Strand 2	F	47	51	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	70	73	first strand
Strand 2	F	78	81	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	102	104	first strand
Strand 2	F	109	111	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C0Z

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C0Z