Analysis of interatomic Contacts of Structural Units in PDB entry:
8C16

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C16 entry

There are 4 chains in PDB entry 8C16 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 6	ASN 319
D	GLU 5	PHE 331
C	ASN 6	PRO 318
B	ASN 6	PHE 331

There are 36 helices in PDB entry 8C16. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	30	Right-handed alpha
Helix 2	AA2	A	46	52	Right-handed alpha
Helix 3	AA3	A	68	80	Right-handed alpha
Helix 4	AA4	A	136	141	Right-handed alpha
Helix 5	AA5	A	151	155	Right-handed 310
Helix 6	AA6	A	165	176	Right-handed alpha
Helix 7	AA7	A	194	203	Right-handed alpha
Helix 8	AA8	A	254	261	Right-handed 310
Helix 9	AA9	A	297	317	Right-handed alpha
Helix 10	AB1	D	18	30	Right-handed alpha
Helix 11	AB2	D	46	52	Right-handed alpha
Helix 12	AB3	D	68	80	Right-handed alpha
Helix 13	AB4	D	138	142	Right-handed 310
Helix 14	AB5	D	151	155	Right-handed 310
Helix 15	AB6	D	165	175	Right-handed alpha
Helix 16	AB7	D	194	203	Right-handed alpha
Helix 17	AB8	D	254	261	Right-handed 310
Helix 18	AB9	D	297	317	Right-handed alpha
Helix 19	AC1	C	18	30	Right-handed alpha
Helix 20	AC2	C	46	52	Right-handed alpha
Helix 21	AC3	C	68	80	Right-handed alpha
Helix 22	AC4	C	135	141	Right-handed alpha
Helix 23	AC5	C	151	155	Right-handed 310
Helix 24	AC6	C	165	175	Right-handed alpha
Helix 25	AC7	C	194	203	Right-handed alpha
Helix 26	AC8	C	257	261	Right-handed 310
Helix 27	AC9	C	297	317	Right-handed alpha
Helix 28	AD1	B	18	30	Right-handed alpha
Helix 29	AD2	B	46	52	Right-handed alpha
Helix 30	AD3	B	68	80	Right-handed alpha
Helix 31	AD4	B	136	141	Right-handed alpha
Helix 32	AD5	B	165	175	Right-handed alpha
Helix 33	AD6	B	194	203	Right-handed alpha
Helix 34	AD7	B	254	261	Right-handed 310
Helix 35	AD8	B	297	317	Right-handed alpha
Helix 36	AD9	B	326	331	Right-handed 310

There are 24 sheets in PDB entry 8C16. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	35	38	parallel
Strand 3	A	10	15	parallel
Strand 4	A	111	119	parallel
Strand 5	A	103	106	anti-parallel
Strand 6	A	94	97	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	87	first strand
Strand 2	A	35	38	parallel
Strand 3	A	10	15	parallel
Strand 4	A	111	119	parallel
Strand 5	A	282	284	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	66	67	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	144	145	first strand
Strand 2	A	243	246	parallel
Strand 3	A	159	162	parallel
Strand 4	A	182	185	parallel
Strand 5	A	207	209	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	218	first strand
Strand 2	A	225	227	anti-parallel
Strand 3	A	238	240	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	270	first strand
Strand 2	A	289	290	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	87	first strand
Strand 2	D	35	38	parallel
Strand 3	D	12	15	parallel
Strand 4	D	116	119	parallel
Strand 5	D	282	284	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	56	57	first strand
Strand 2	D	66	67	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	97	first strand
Strand 2	D	103	106	anti-parallel
Strand 3	D	111	114	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	145	first strand
Strand 2	D	243	246	parallel
Strand 3	D	159	162	parallel
Strand 4	D	182	185	parallel
Strand 5	D	207	209	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	216	218	first strand
Strand 2	D	225	227	anti-parallel
Strand 3	D	238	240	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	269	270	first strand
Strand 2	D	289	290	parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	88	first strand
Strand 2	C	35	39	parallel
Strand 3	C	9	15	parallel
Strand 4	C	111	119	parallel
Strand 5	C	103	106	anti-parallel
Strand 6	C	94	97	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	85	88	first strand
Strand 2	C	35	39	parallel
Strand 3	C	9	15	parallel
Strand 4	C	111	119	parallel
Strand 5	C	282	284	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	57	first strand
Strand 2	C	66	67	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	243	246	parallel
Strand 3	C	159	162	parallel
Strand 4	C	182	185	parallel
Strand 5	C	207	209	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	216	218	first strand
Strand 2	C	225	227	anti-parallel
Strand 3	C	238	240	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	269	270	first strand
Strand 2	C	289	290	parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	35	38	parallel
Strand 3	B	9	15	parallel
Strand 4	B	111	119	parallel
Strand 5	B	103	106	anti-parallel
Strand 6	B	94	97	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	85	87	first strand
Strand 2	B	35	38	parallel
Strand 3	B	9	15	parallel
Strand 4	B	111	119	parallel
Strand 5	B	282	284	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	57	first strand
Strand 2	B	66	67	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	144	145	first strand
Strand 2	B	243	246	parallel
Strand 3	B	159	162	parallel
Strand 4	B	182	186	parallel
Strand 5	B	207	211	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	216	218	first strand
Strand 2	B	225	227	anti-parallel
Strand 3	B	238	240	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	269	270	first strand
Strand 2	B	289	290	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C16

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C16