Analysis of interatomic Contacts of Structural Units in PDB entry:
8C1L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C1L entry

There are 4 chains in PDB entry 8C1L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 145GLY 368
B
 PRO 141GLY 368
D
 HIS 7GLN 15
E
 LYS 8GLN 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 8C1L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
145 154Right-handed alpha
Helix 2
AA2
A
166 170Right-handed 310
Helix 3
AA3
A
174 195Right-handed alpha
Helix 4
AA4
A
196 201Right-handed alpha
Helix 5
AA5
A
203 214Right-handed alpha
Helix 6
AA6
A
214 228Right-handed alpha
Helix 7
AA7
A
246 251Right-handed 310
Helix 8
AA8
A
252 263Right-handed alpha
Helix 9
AA9
A
263 271Right-handed alpha
Helix 10
AB1
A
273 286Right-handed alpha
Helix 11
AB2
A
295 316Right-handed alpha
Helix 12
AB3
A
323 330Right-handed alpha
Helix 13
AB4
A
330 352Right-handed alpha
Helix 14
AB5
A
358 366Right-handed alpha
Helix 15
AB6
B
142 154Right-handed alpha
Helix 16
AB7
B
166 170Right-handed 310
Helix 17
AB8
B
174 195Right-handed alpha
Helix 18
AB9
B
196 201Right-handed alpha
Helix 19
AC1
B
203 214Right-handed alpha
Helix 20
AC2
B
214 228Right-handed alpha
Helix 21
AC3
B
246 251Right-handed 310
Helix 22
AC4
B
252 263Right-handed alpha
Helix 23
AC5
B
263 271Right-handed alpha
Helix 24
AC6
B
273 286Right-handed alpha
Helix 25
AC7
B
295 317Right-handed alpha
Helix 26
AC8
B
323 330Right-handed alpha
Helix 27
AC9
B
330 352Right-handed alpha
Helix 28
AD1
B
358 366Right-handed alpha
Helix 29
AD2
D
8 15Right-handed alpha
Helix 30
AD3
E
9 15Right-handed alpha
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There are 2 sheets in PDB entry 8C1L. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 235first strand
Strand 2
A
241 243anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 235first strand
Strand 2
B
241 243anti-parallel
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