Analysis of interatomic Contacts of Structural Units in PDB entry:
8C1P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C1P entry

There are 8 chains in PDB entry 8C1P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 389	ARG 815
B	ARG 389	ARG 815
C	ARG 389	ARG 815
D	ARG 389	ARG 815
E	ASP 5	ALA 209
F	ASP 5	ALA 209
G	ASP 5	ALA 209
H	ASP 5	ALA 209

There are 88 helices in PDB entry 8C1P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	407	411	Right-handed 310
Helix 2	AA2	A	412	415	Right-handed 310
Helix 3	AA3	A	419	433	Right-handed alpha
Helix 4	AA4	A	458	465	Right-handed alpha
Helix 5	AA5	A	478	483	Right-handed alpha
Helix 6	AA6	A	511	515	Right-handed 310
Helix 7	AA7	A	518	543	Right-handed alpha
Helix 8	AA8	A	568	581	Right-handed alpha
Helix 9	AA9	A	591	620	Right-handed alpha
Helix 10	AB1	A	631	638	Right-handed alpha
Helix 11	AB2	A	649	657	Right-handed alpha
Helix 12	AB3	A	660	673	Right-handed alpha
Helix 13	AB4	A	681	691	Right-handed alpha
Helix 14	AB5	A	702	710	Right-handed alpha
Helix 15	AB6	A	738	752	Right-handed alpha
Helix 16	AB7	A	753	764	Right-handed alpha
Helix 17	AB8	A	784	815	Right-handed alpha
Helix 18	AB9	B	413	415	Right-handed 310
Helix 19	AC1	B	419	433	Right-handed alpha
Helix 20	AC2	B	457	465	Right-handed alpha
Helix 21	AC3	B	478	483	Right-handed alpha
Helix 22	AC4	B	511	515	Right-handed 310
Helix 23	AC5	B	518	543	Right-handed alpha
Helix 24	AC6	B	568	581	Right-handed alpha
Helix 25	AC7	B	591	614	Right-handed alpha
Helix 26	AC8	B	615	621	Right-handed alpha
Helix 27	AC9	B	631	638	Right-handed alpha
Helix 28	AD1	B	649	657	Right-handed alpha
Helix 29	AD2	B	660	673	Right-handed alpha
Helix 30	AD3	B	681	692	Right-handed alpha
Helix 31	AD4	B	702	711	Right-handed alpha
Helix 32	AD5	B	738	752	Right-handed alpha
Helix 33	AD6	B	753	764	Right-handed alpha
Helix 34	AD7	B	784	815	Right-handed alpha
Helix 35	AD8	C	407	411	Right-handed 310
Helix 36	AD9	C	413	415	Right-handed 310
Helix 37	AE1	C	419	433	Right-handed alpha
Helix 38	AE2	C	458	465	Right-handed alpha
Helix 39	AE3	C	478	483	Right-handed alpha
Helix 40	AE4	C	511	515	Right-handed 310
Helix 41	AE5	C	518	543	Right-handed alpha
Helix 42	AE6	C	568	581	Right-handed alpha
Helix 43	AE7	C	591	621	Right-handed alpha
Helix 44	AE8	C	631	638	Right-handed alpha
Helix 45	AE9	C	649	657	Right-handed alpha
Helix 46	AF1	C	660	672	Right-handed alpha
Helix 47	AF2	C	681	691	Right-handed alpha
Helix 48	AF3	C	702	711	Right-handed alpha
Helix 49	AF4	C	738	752	Right-handed alpha
Helix 50	AF5	C	753	765	Right-handed alpha
Helix 51	AF6	C	784	815	Right-handed alpha
Helix 52	AF7	D	412	415	Right-handed 310
Helix 53	AF8	D	419	433	Right-handed alpha
Helix 54	AF9	D	457	466	Right-handed alpha
Helix 55	AG1	D	478	483	Right-handed alpha
Helix 56	AG2	D	511	515	Right-handed 310
Helix 57	AG3	D	518	543	Right-handed alpha
Helix 58	AG4	D	568	581	Right-handed alpha
Helix 59	AG5	D	591	614	Right-handed alpha
Helix 60	AG6	D	615	621	Right-handed alpha
Helix 61	AG7	D	631	638	Right-handed alpha
Helix 62	AG8	D	649	657	Right-handed alpha
Helix 63	AG9	D	660	673	Right-handed alpha
Helix 64	AH1	D	681	692	Right-handed alpha
Helix 65	AH2	D	702	711	Right-handed alpha
Helix 66	AH3	D	738	752	Right-handed alpha
Helix 67	AH4	D	753	764	Right-handed alpha
Helix 68	AH5	D	784	815	Right-handed alpha
Helix 69	AH6	E	6	30	Right-handed alpha
Helix 70	AH7	E	93	105	Right-handed alpha
Helix 71	AH8	E	105	128	Right-handed alpha
Helix 72	AH9	E	132	161	Right-handed alpha
Helix 73	AI1	E	176	207	Right-handed alpha
Helix 74	AI2	F	6	30	Right-handed alpha
Helix 75	AI3	F	93	105	Right-handed alpha
Helix 76	AI4	F	105	128	Right-handed alpha
Helix 77	AI5	F	132	161	Right-handed alpha
Helix 78	AI6	F	176	207	Right-handed alpha
Helix 79	AI7	G	6	30	Right-handed alpha
Helix 80	AI8	G	93	105	Right-handed alpha
Helix 81	AI9	G	105	128	Right-handed alpha
Helix 82	AJ1	G	132	161	Right-handed alpha
Helix 83	AJ2	G	176	207	Right-handed alpha
Helix 84	AJ3	H	6	30	Right-handed alpha
Helix 85	AJ4	H	93	105	Right-handed alpha
Helix 86	AJ5	H	105	128	Right-handed alpha
Helix 87	AJ6	H	132	161	Right-handed alpha
Helix 88	AJ7	H	176	207	Right-handed alpha

There are 26 sheets in PDB entry 8C1P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	435	440	first strand
Strand 2	A	390	395	parallel
Strand 3	A	470	471	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	403	404	first strand
Strand 2	A	417	418	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	449	first strand
Strand 2	A	456	457	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	485	487	first strand
Strand 2	A	731	733	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	492	494	first strand
Strand 2	A	726	728	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	642	644	first strand
Strand 2	A	696	701	parallel
Strand 3	A	496	501	anti-parallel
Strand 4	A	716	719	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	436	440	first strand
Strand 2	B	391	395	parallel
Strand 3	B	470	471	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	403	404	first strand
Strand 2	B	417	418	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	485	487	first strand
Strand 2	B	731	733	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	492	494	first strand
Strand 2	B	726	728	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	642	644	first strand
Strand 2	B	696	701	parallel
Strand 3	B	496	501	anti-parallel
Strand 4	B	716	719	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	435	440	first strand
Strand 2	C	390	395	parallel
Strand 3	C	470	471	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	403	404	first strand
Strand 2	C	417	418	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	447	450	first strand
Strand 2	C	455	457	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	485	487	first strand
Strand 2	C	731	733	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	492	494	first strand
Strand 2	C	726	728	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	642	644	first strand
Strand 2	C	696	701	parallel
Strand 3	C	496	501	anti-parallel
Strand 4	C	716	719	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	436	440	first strand
Strand 2	D	391	395	parallel
Strand 3	D	470	471	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	403	404	first strand
Strand 2	D	417	418	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	485	487	first strand
Strand 2	D	731	733	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	492	494	first strand
Strand 2	D	726	728	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	642	644	first strand
Strand 2	D	696	701	parallel
Strand 3	D	496	501	anti-parallel
Strand 4	D	716	719	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	77	79	first strand
Strand 2	E	65	68	anti-parallel
Strand 3	E	57	61	anti-parallel
Strand 4	E	34	38	anti-parallel
Strand 5	E	173	175	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	77	79	first strand
Strand 2	F	65	68	anti-parallel
Strand 3	F	57	61	anti-parallel
Strand 4	F	34	38	anti-parallel
Strand 5	F	173	175	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	77	79	first strand
Strand 2	G	65	68	anti-parallel
Strand 3	G	57	61	anti-parallel
Strand 4	G	34	38	anti-parallel
Strand 5	G	173	175	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	77	79	first strand
Strand 2	H	65	68	anti-parallel
Strand 3	H	57	61	anti-parallel
Strand 4	H	34	38	anti-parallel
Strand 5	H	173	175	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C1P

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C1P