Analysis of interatomic Contacts of Structural Units in PDB entry:
8C1V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C1V entry

There are 6 chains in PDB entry 8C1V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 26	ASP 1146
C	PRO 26	ASP 1146
B	PRO 26	ASP 1146
D	GLU 1	SER 60
E	GLU 1	SER 60
F	GLU 1	SER 60

There are 57 helices in PDB entry 8C1V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	294	304	Right-handed alpha
Helix 2	AA2	A	338	343	Right-handed alpha
Helix 3	AA3	A	365	370	Right-handed alpha
Helix 4	AA4	A	385	390	Right-handed alpha
Helix 5	AA5	A	405	410	Right-handed 310
Helix 6	AA6	A	417	422	Right-handed alpha
Helix 7	AA7	A	738	743	Right-handed alpha
Helix 8	AA8	A	746	755	Right-handed alpha
Helix 9	AA9	A	758	783	Right-handed alpha
Helix 10	AB1	A	816	826	Right-handed alpha
Helix 11	AB2	A	866	884	Right-handed alpha
Helix 12	AB3	A	886	891	Right-handed alpha
Helix 13	AB4	A	897	908	Right-handed alpha
Helix 14	AB5	A	913	919	Right-handed alpha
Helix 15	AB6	A	919	937	Right-handed alpha
Helix 16	AB7	A	946	966	Right-handed alpha
Helix 17	AB8	A	976	983	Right-handed alpha
Helix 18	AB9	A	985	1033	Right-handed alpha
Helix 19	AC1	A	1140	1146	Right-handed alpha
Helix 20	AC2	C	294	304	Right-handed alpha
Helix 21	AC3	C	338	343	Right-handed alpha
Helix 22	AC4	C	365	370	Right-handed alpha
Helix 23	AC5	C	385	390	Right-handed alpha
Helix 24	AC6	C	405	410	Right-handed 310
Helix 25	AC7	C	417	422	Right-handed alpha
Helix 26	AC8	C	738	743	Right-handed alpha
Helix 27	AC9	C	746	755	Right-handed alpha
Helix 28	AD1	C	758	783	Right-handed alpha
Helix 29	AD2	C	816	826	Right-handed alpha
Helix 30	AD3	C	866	884	Right-handed alpha
Helix 31	AD4	C	886	891	Right-handed alpha
Helix 32	AD5	C	897	908	Right-handed alpha
Helix 33	AD6	C	913	919	Right-handed alpha
Helix 34	AD7	C	919	938	Right-handed alpha
Helix 35	AD8	C	946	967	Right-handed alpha
Helix 36	AD9	C	976	983	Right-handed alpha
Helix 37	AE1	C	985	1033	Right-handed alpha
Helix 38	AE2	C	1140	1146	Right-handed alpha
Helix 39	AE3	B	294	304	Right-handed alpha
Helix 40	AE4	B	338	343	Right-handed alpha
Helix 41	AE5	B	365	370	Right-handed alpha
Helix 42	AE6	B	385	390	Right-handed alpha
Helix 43	AE7	B	405	410	Right-handed 310
Helix 44	AE8	B	417	422	Right-handed alpha
Helix 45	AE9	B	738	743	Right-handed alpha
Helix 46	AF1	B	746	755	Right-handed alpha
Helix 47	AF2	B	758	783	Right-handed alpha
Helix 48	AF3	B	816	826	Right-handed alpha
Helix 49	AF4	B	866	884	Right-handed alpha
Helix 50	AF5	B	886	891	Right-handed alpha
Helix 51	AF6	B	897	908	Right-handed alpha
Helix 52	AF7	B	912	919	Right-handed alpha
Helix 53	AF8	B	919	940	Right-handed alpha
Helix 54	AF9	B	946	967	Right-handed alpha
Helix 55	AG1	B	976	983	Right-handed alpha
Helix 56	AG2	B	985	1033	Right-handed alpha
Helix 57	AG3	B	1140	1146	Right-handed alpha

There are 45 sheets in PDB entry 8C1V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	60	65	anti-parallel
Strand 3	A	265	267	anti-parallel
Strand 4	A	90	94	anti-parallel
Strand 5	A	187	197	anti-parallel
Strand 6	A	200	210	anti-parallel
Strand 7	A	222	229	anti-parallel
Strand 8	A	36	37	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	C	565	567	parallel
Strand 3	C	573	578	anti-parallel
Strand 4	C	583	588	anti-parallel
Strand 5	C	547	554	anti-parallel
Strand 6	C	538	542	anti-parallel
Strand 7	C	326	327	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	55	first strand
Strand 2	A	271	279	anti-parallel
Strand 3	A	285	290	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	85	first strand
Strand 2	A	237	242	anti-parallel
Strand 3	A	101	107	anti-parallel
Strand 4	A	117	121	anti-parallel
Strand 5	A	126	129	anti-parallel
Strand 6	A	169	172	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	311	318	first strand
Strand 2	A	593	599	anti-parallel
Strand 3	A	609	612	anti-parallel
Strand 4	A	648	651	anti-parallel
Strand 5	A	642	645	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	356	first strand
Strand 2	A	397	403	anti-parallel
Strand 3	A	507	514	anti-parallel
Strand 4	A	431	437	anti-parallel
Strand 5	A	378	380	anti-parallel
Strand 6	D	9	10	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	542	first strand
Strand 2	A	547	554	anti-parallel
Strand 3	A	583	588	anti-parallel
Strand 4	A	573	578	anti-parallel
Strand 5	A	565	567	anti-parallel
Strand 6	B	42	43	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	654	660	first strand
Strand 2	A	693	697	parallel
Strand 3	A	670	673	anti-parallel
Strand 4	A	664	667	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	703	first strand
Strand 2	B	788	789	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	728	first strand
Strand 2	A	1059	1076	anti-parallel
Strand 3	A	1047	1050	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	728	first strand
Strand 2	A	1059	1076	anti-parallel
Strand 3	A	1054	1055	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	736	first strand
Strand 2	A	858	861	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	789	790	first strand
Strand 2	C	703	704	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1125	first strand
Strand 2	A	1086	1090	anti-parallel
Strand 3	A	1081	1083	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1094	1097	first strand
Strand 2	A	1102	1105	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	29	31	first strand
Strand 2	C	60	65	anti-parallel
Strand 3	C	265	267	anti-parallel
Strand 4	C	90	94	anti-parallel
Strand 5	C	187	197	anti-parallel
Strand 6	C	200	210	anti-parallel
Strand 7	C	222	229	anti-parallel
Strand 8	C	36	37	parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	43	first strand
Strand 2	B	565	567	parallel
Strand 3	B	573	577	anti-parallel
Strand 4	B	584	588	anti-parallel
Strand 5	B	547	554	anti-parallel
Strand 6	B	538	542	anti-parallel
Strand 7	B	326	327	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	55	first strand
Strand 2	C	271	279	anti-parallel
Strand 3	C	285	290	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	242	anti-parallel
Strand 3	C	101	107	anti-parallel
Strand 4	C	117	121	anti-parallel
Strand 5	C	126	129	anti-parallel
Strand 6	C	169	172	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	318	first strand
Strand 2	C	593	599	anti-parallel
Strand 3	C	609	612	anti-parallel
Strand 4	C	650	651	anti-parallel
Strand 5	C	642	643	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	356	first strand
Strand 2	C	397	403	anti-parallel
Strand 3	C	507	514	anti-parallel
Strand 4	C	431	437	anti-parallel
Strand 5	C	378	380	anti-parallel
Strand 6	E	9	10	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	654	660	first strand
Strand 2	C	693	697	parallel
Strand 3	C	670	673	anti-parallel
Strand 4	C	664	667	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	728	first strand
Strand 2	C	1059	1076	anti-parallel
Strand 3	C	1047	1051	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	728	first strand
Strand 2	C	1059	1076	anti-parallel
Strand 3	C	1054	1055	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	733	736	first strand
Strand 2	C	858	861	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	790	first strand
Strand 2	B	703	704	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1122	first strand
Strand 2	C	1086	1090	anti-parallel
Strand 3	C	1081	1083	anti-parallel
Strand 4	C	1133	1134	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1094	1097	first strand
Strand 2	C	1102	1105	anti-parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	31	first strand
Strand 2	B	60	65	anti-parallel
Strand 3	B	265	267	anti-parallel
Strand 4	B	90	94	anti-parallel
Strand 5	B	187	197	anti-parallel
Strand 6	B	200	210	anti-parallel
Strand 7	B	222	230	anti-parallel
Strand 8	B	36	37	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	55	first strand
Strand 2	B	271	279	anti-parallel
Strand 3	B	285	290	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	85	first strand
Strand 2	B	237	242	anti-parallel
Strand 3	B	101	107	anti-parallel
Strand 4	B	117	121	anti-parallel
Strand 5	B	126	129	anti-parallel
Strand 6	B	169	172	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	318	first strand
Strand 2	B	593	599	anti-parallel
Strand 3	B	609	612	anti-parallel
Strand 4	B	648	651	anti-parallel
Strand 5	B	642	645	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	356	first strand
Strand 2	B	397	403	anti-parallel
Strand 3	B	507	514	anti-parallel
Strand 4	B	431	437	anti-parallel
Strand 5	B	378	380	anti-parallel
Strand 6	F	9	10	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	654	655	first strand
Strand 2	B	693	695	parallel
Strand 3	B	670	673	anti-parallel
Strand 4	B	664	667	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	728	first strand
Strand 2	B	1059	1076	anti-parallel
Strand 3	B	1047	1051	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	728	first strand
Strand 2	B	1059	1076	anti-parallel
Strand 3	B	1054	1056	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	733	736	first strand
Strand 2	B	858	861	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1122	first strand
Strand 2	B	1086	1090	anti-parallel
Strand 3	B	1081	1083	anti-parallel
Strand 4	B	1133	1134	parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1094	1097	first strand
Strand 2	B	1102	1105	anti-parallel

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There are 5 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	52	first strand
Strand 2	D	38	42	anti-parallel
Strand 3	D	24	27	anti-parallel
Strand 4	D	2	5	anti-parallel
Strand 5	D	56	58	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	52	first strand
Strand 2	E	38	42	anti-parallel
Strand 3	E	24	27	anti-parallel
Strand 4	E	2	5	anti-parallel
Strand 5	E	56	58	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	48	52	first strand
Strand 2	F	38	42	anti-parallel
Strand 3	F	24	27	anti-parallel
Strand 4	F	2	5	anti-parallel
Strand 5	F	56	58	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C1V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C1V