Analysis of interatomic Contacts of Structural Units in PDB entry:
8C25


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C25 entry

There are 2 chains in PDB entry 8C25 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 7PHE 268
B
 PRO 6PHE 268
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8C25. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 24Right-handed alpha
Helix 2
AA2
A
38 40Right-handed 310
Helix 3
AA3
A
41 46Right-handed alpha
Helix 4
AA4
A
55 57Right-handed 310
Helix 5
AA5
A
90 94Right-handed 310
Helix 6
AA6
A
96 110Right-handed alpha
Helix 7
AA7
A
161 172Right-handed alpha
Helix 8
AA8
A
190 201Right-handed alpha
Helix 9
AA9
A
209 219Right-handed alpha
Helix 10
AB1
A
242 253Right-handed alpha
Helix 11
AB2
A
253 267Right-handed alpha
Helix 12
AB3
B
7 24Right-handed alpha
Helix 13
AB4
B
38 45Right-handed 310
Helix 14
AB5
B
55 57Right-handed 310
Helix 15
AB6
B
90 94Right-handed 310
Helix 16
AB7
B
96 110Right-handed alpha
Helix 17
AB8
B
161 172Right-handed alpha
Helix 18
AB9
B
190 200Right-handed alpha
Helix 19
AC1
B
209 219Right-handed alpha
Helix 20
AC2
B
242 266Right-handed alpha
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There are 2 sheets in PDB entry 8C25. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 53first strand
Strand 2
A
71 77anti-parallel
Strand 3
A
80 86anti-parallel
Strand 4
A
30 34parallel
Strand 5
A
114 123parallel
Strand 6
A
222 232parallel
Strand 7
A
133 141anti-parallel
Strand 8
A
176 182parallel
Strand 9
A
204 206parallel
Strand 10
A
114 123anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
50 53first strand
Strand 2
B
71 77anti-parallel
Strand 3
B
80 86anti-parallel
Strand 4
B
30 34parallel
Strand 5
B
114 123parallel
Strand 6
B
222 232parallel
Strand 7
B
133 141anti-parallel
Strand 8
B
176 182parallel
Strand 9
B
204 206parallel
Strand 10
B
114 123anti-parallel
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