Analysis of interatomic Contacts of Structural Units in PDB entry:
8C2Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C2Z entry

There are 2 chains in PDB entry 8C2Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 88GLN 272
A
 ILE 274THR 434
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8C2Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
145 163Right-handed alpha
Helix 2
AA2
A
168 173Right-handed 310
Helix 3
AA3
A
197 204Right-handed alpha
Helix 4
AA4
A
210 230Right-handed alpha
Helix 5
AA5
A
241 243Right-handed 310
Helix 6
AA6
A
276 280Right-handed 310
Helix 7
AA7
A
281 286Right-handed alpha
Helix 8
AA8
A
292 309Right-handed alpha
Helix 9
AA9
A
317 330Right-handed alpha
Helix 10
AB1
A
333 339Right-handed alpha
Helix 11
AB2
A
342 346Right-handed alpha
Helix 12
AB3
A
374 380Right-handed alpha
Helix 13
AB4
A
397 412Right-handed alpha
Helix 14
AB5
A
421 427Right-handed alpha
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There are 4 sheets in PDB entry 8C2Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 107first strand
Strand 2
A
111 120anti-parallel
Strand 3
A
123 130anti-parallel
Strand 4
A
135 142anti-parallel
Strand 5
A
185 191anti-parallel
Strand 6
A
176 182anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 196first strand
Strand 2
A
245 247anti-parallel
Strand 3
A
255 257anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
235 236first strand
Strand 2
A
264 265anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 349first strand
Strand 2
A
355 357anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il