Analysis of interatomic Contacts of Structural Units in PDB entry:
8C33


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C33 entry

There are 4 chains in PDB entry 8C33 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 80TRP 275
B
 VAL 78ARG 278
C
 ARG 79LEU 274
D
 ARG 79PRO 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 42 helices in PDB entry 8C33. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
82 93Right-handed alpha
Helix 2
AA2
A
95 119Right-handed alpha
Helix 3
AA3
A
119 133Right-handed alpha
Helix 4
AA4
A
137 159Right-handed alpha
Helix 5
AA5
A
178 191Right-handed alpha
Helix 6
AA6
A
203 215Right-handed alpha
Helix 7
AA7
A
226 231Right-handed alpha
Helix 8
AA8
A
252 260Right-handed alpha
Helix 9
AA9
A
266 275Right-handed alpha
Helix 10
AB1
B
79 82Right-handed 310
Helix 11
AB2
B
83 93Right-handed alpha
Helix 12
AB3
B
95 119Right-handed alpha
Helix 13
AB4
B
119 133Right-handed alpha
Helix 14
AB5
B
137 159Right-handed alpha
Helix 15
AB6
B
178 191Right-handed alpha
Helix 16
AB7
B
203 215Right-handed alpha
Helix 17
AB8
B
226 231Right-handed alpha
Helix 18
AB9
B
252 260Right-handed alpha
Helix 19
AC1
B
266 268Right-handed 310
Helix 20
AC2
B
269 274Right-handed alpha
Helix 21
AC3
C
79 81Right-handed 310
Helix 22
AC4
C
82 93Right-handed alpha
Helix 23
AC5
C
95 119Right-handed alpha
Helix 24
AC6
C
119 133Right-handed alpha
Helix 25
AC7
C
137 160Right-handed alpha
Helix 26
AC8
C
178 191Right-handed alpha
Helix 27
AC9
C
203 215Right-handed alpha
Helix 28
AD1
C
226 231Right-handed alpha
Helix 29
AD2
C
252 260Right-handed alpha
Helix 30
AD3
C
266 268Right-handed 310
Helix 31
AD4
C
269 274Right-handed alpha
Helix 32
AD5
D
79 81Right-handed 310
Helix 33
AD6
D
82 93Right-handed alpha
Helix 34
AD7
D
95 119Right-handed alpha
Helix 35
AD8
D
119 133Right-handed alpha
Helix 36
AD9
D
137 159Right-handed alpha
Helix 37
AE1
D
178 191Right-handed alpha
Helix 38
AE2
D
203 215Right-handed alpha
Helix 39
AE3
D
226 231Right-handed alpha
Helix 40
AE4
D
252 260Right-handed alpha
Helix 41
AE5
D
266 268Right-handed 310
Helix 42
AE6
D
269 276Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8C33. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
167 170parallel
Strand 3
A
218 222parallel
Strand 4
A
243 247parallel
Strand 5
A
262 263parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 197first strand
Strand 2
B
167 170parallel
Strand 3
B
218 222parallel
Strand 4
B
243 247parallel
Strand 5
B
262 263parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
195 197first strand
Strand 2
C
167 170parallel
Strand 3
C
218 222parallel
Strand 4
C
243 247parallel
Strand 5
C
262 263parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
195 197first strand
Strand 2
D
167 170parallel
Strand 3
D
218 222parallel
Strand 4
D
243 247parallel
Strand 5
D
262 263parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il