Analysis of interatomic Contacts of Structural Units in PDB entry:
8C34


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C34 entry

There are 4 chains in PDB entry 8C34 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 78LEU 274
B
 VAL 78ARG 278
C
 VAL 78LEU 274
D
 ARG 79ARG 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8C34. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
79 81Right-handed 310
Helix 2
AA2
A
82 93Right-handed alpha
Helix 3
AA3
A
95 119Right-handed alpha
Helix 4
AA4
A
119 133Right-handed alpha
Helix 5
AA5
A
137 159Right-handed alpha
Helix 6
AA6
A
178 191Right-handed alpha
Helix 7
AA7
A
203 215Right-handed alpha
Helix 8
AA8
A
226 231Right-handed alpha
Helix 9
AA9
A
252 260Right-handed alpha
Helix 10
AB1
A
266 268Right-handed 310
Helix 11
AB2
A
269 274Right-handed alpha
Helix 12
AB3
B
79 82Right-handed 310
Helix 13
AB4
B
83 93Right-handed alpha
Helix 14
AB5
B
95 119Right-handed alpha
Helix 15
AB6
B
119 133Right-handed alpha
Helix 16
AB7
B
137 160Right-handed alpha
Helix 17
AB8
B
178 191Right-handed alpha
Helix 18
AB9
B
203 215Right-handed alpha
Helix 19
AC1
B
226 231Right-handed alpha
Helix 20
AC2
B
252 260Right-handed alpha
Helix 21
AC3
B
266 268Right-handed 310
Helix 22
AC4
B
269 274Right-handed alpha
Helix 23
AC5
C
79 81Right-handed 310
Helix 24
AC6
C
82 93Right-handed alpha
Helix 25
AC7
C
95 119Right-handed alpha
Helix 26
AC8
C
119 133Right-handed alpha
Helix 27
AC9
C
137 160Right-handed alpha
Helix 28
AD1
C
178 191Right-handed alpha
Helix 29
AD2
C
203 215Right-handed alpha
Helix 30
AD3
C
226 231Right-handed alpha
Helix 31
AD4
C
252 260Right-handed alpha
Helix 32
AD5
C
266 268Right-handed 310
Helix 33
AD6
C
269 274Right-handed alpha
Helix 34
AD7
D
79 81Right-handed 310
Helix 35
AD8
D
82 93Right-handed alpha
Helix 36
AD9
D
95 119Right-handed alpha
Helix 37
AE1
D
119 133Right-handed alpha
Helix 38
AE2
D
137 160Right-handed alpha
Helix 39
AE3
D
178 190Right-handed alpha
Helix 40
AE4
D
203 215Right-handed alpha
Helix 41
AE5
D
226 231Right-handed alpha
Helix 42
AE6
D
252 260Right-handed alpha
Helix 43
AE7
D
266 268Right-handed 310
Helix 44
AE8
D
269 276Right-handed alpha
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There are 4 sheets in PDB entry 8C34. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 197first strand
Strand 2
A
167 170parallel
Strand 3
A
218 222parallel
Strand 4
A
243 247parallel
Strand 5
A
262 263parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
195 197first strand
Strand 2
B
167 170parallel
Strand 3
B
218 222parallel
Strand 4
B
243 247parallel
Strand 5
B
262 263parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
195 197first strand
Strand 2
C
167 170parallel
Strand 3
C
218 222parallel
Strand 4
C
243 247parallel
Strand 5
C
262 263parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
195 197first strand
Strand 2
D
167 170parallel
Strand 3
D
218 222parallel
Strand 4
D
243 247parallel
Strand 5
D
262 263parallel
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