Analysis of interatomic Contacts of Structural Units in PDB entry:
8C3M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C3M entry

There are 2 chains in PDB entry 8C3M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4LYS 349
B
 GLU 4LYS 349
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8C3M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 28Right-handed alpha
Helix 2
AA2
A
42 48Right-handed 310
Helix 3
AA3
A
64 76Right-handed alpha
Helix 4
AA4
A
132 137Right-handed 310
Helix 5
AA5
A
148 152Right-handed 310
Helix 6
AA6
A
162 173Right-handed alpha
Helix 7
AA7
A
191 200Right-handed alpha
Helix 8
AA8
A
300 320Right-handed alpha
Helix 9
AA9
A
329 335Right-handed 310
Helix 10
AB1
A
336 348Right-handed alpha
Helix 11
AB2
B
15 28Right-handed alpha
Helix 12
AB3
B
42 48Right-handed 310
Helix 13
AB4
B
64 77Right-handed alpha
Helix 14
AB5
B
132 139Right-handed 310
Helix 15
AB6
B
148 152Right-handed 310
Helix 16
AB7
B
164 173Right-handed alpha
Helix 17
AB8
B
191 201Right-handed alpha
Helix 18
AB9
B
300 320Right-handed alpha
Helix 19
AC1
B
329 335Right-handed 310
Helix 20
AC2
B
336 348Right-handed alpha
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There are 14 sheets in PDB entry 8C3M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
32 35parallel
Strand 3
A
6 12parallel
Strand 4
A
108 116parallel
Strand 5
A
99 103anti-parallel
Strand 6
A
88 93anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 83first strand
Strand 2
A
32 35parallel
Strand 3
A
6 12parallel
Strand 4
A
108 116parallel
Strand 5
A
285 287parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
62 63anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
122 125first strand
Strand 2
A
250 253anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 142first strand
Strand 2
A
243 246parallel
Strand 3
A
155 159parallel
Strand 4
A
178 183parallel
Strand 5
A
203 207parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
209 216first strand
Strand 2
A
223 230anti-parallel
Strand 3
A
236 240anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
271 273anti-parallel
Strand 3
A
292 293parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
32 35parallel
Strand 3
B
6 12parallel
Strand 4
B
108 116parallel
Strand 5
B
99 103anti-parallel
Strand 6
B
88 93anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
81 83first strand
Strand 2
B
32 35parallel
Strand 3
B
6 12parallel
Strand 4
B
108 116parallel
Strand 5
B
285 287parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 53first strand
Strand 2
B
62 63anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 125first strand
Strand 2
B
250 253anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
141 142first strand
Strand 2
B
243 246parallel
Strand 3
B
155 159parallel
Strand 4
B
178 183parallel
Strand 5
B
203 207parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 216first strand
Strand 2
B
223 230anti-parallel
Strand 3
B
236 240anti-parallel
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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 267first strand
Strand 2
B
271 273anti-parallel
Strand 3
B
292 293parallel
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