Analysis of interatomic Contacts of Structural Units in PDB entry:
8C3P

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C3P entry

There are 2 chains in PDB entry 8C3P (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 55	GLU 885
B	ILE 55	GLU 885

There are 76 helices in PDB entry 8C3P. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	89	94	Right-handed alpha
Helix 2	AA2	A	123	128	Right-handed alpha
Helix 3	AA3	A	133	139	Right-handed alpha
Helix 4	AA4	A	143	147	Right-handed 310
Helix 5	AA5	A	175	180	Right-handed 310
Helix 6	AA6	A	181	186	Right-handed alpha
Helix 7	AA7	A	186	196	Right-handed alpha
Helix 8	AA8	A	209	220	Right-handed alpha
Helix 9	AA9	A	222	227	Right-handed alpha
Helix 10	AB1	A	247	255	Right-handed 310
Helix 11	AB2	A	259	267	Right-handed alpha
Helix 12	AB3	A	281	293	Right-handed alpha
Helix 13	AB4	A	294	295	Right-handed 310
Helix 14	AB5	A	296	300	Right-handed 310
Helix 15	AB6	A	311	319	Right-handed alpha
Helix 16	AB7	A	322	324	Right-handed 310
Helix 17	AB8	A	325	346	Right-handed alpha
Helix 18	AB9	A	366	368	Right-handed 310
Helix 19	AC1	A	374	376	Right-handed 310
Helix 20	AC2	A	404	412	Right-handed alpha
Helix 21	AC3	A	427	429	Right-handed 310
Helix 22	AC4	A	430	434	Right-handed 310
Helix 23	AC5	A	458	463	Right-handed 310
Helix 24	AC6	A	481	485	Right-handed 310
Helix 25	AC7	A	508	517	Right-handed alpha
Helix 26	AC8	A	531	535	Right-handed 310
Helix 27	AC9	A	559	563	Right-handed 310
Helix 28	AD1	A	685	689	Right-handed 310
Helix 29	AD2	A	691	698	Right-handed alpha
Helix 30	AD3	A	708	712	Right-handed 310
Helix 31	AD4	A	714	722	Right-handed alpha
Helix 32	AD5	A	723	725	Right-handed 310
Helix 33	AD6	A	731	744	Right-handed alpha
Helix 34	AD7	A	744	753	Right-handed alpha
Helix 35	AD8	A	774	778	Right-handed 310
Helix 36	AD9	A	806	810	Right-handed 310
Helix 37	AE1	A	836	839	Right-handed 310
Helix 38	AE2	A	840	848	Right-handed alpha
Helix 39	AE3	A	851	860	Right-handed alpha
Helix 40	AE4	A	870	878	Right-handed alpha
Helix 41	AE5	B	79	84	Right-handed alpha
Helix 42	AE6	B	89	94	Right-handed alpha
Helix 43	AE7	B	123	128	Right-handed alpha
Helix 44	AE8	B	133	138	Right-handed alpha
Helix 45	AE9	B	143	147	Right-handed 310
Helix 46	AF1	B	175	182	Right-handed 310
Helix 47	AF2	B	186	196	Right-handed alpha
Helix 48	AF3	B	209	220	Right-handed alpha
Helix 49	AF4	B	222	227	Right-handed alpha
Helix 50	AF5	B	247	255	Right-handed 310
Helix 51	AF6	B	259	267	Right-handed alpha
Helix 52	AF7	B	281	293	Right-handed alpha
Helix 53	AF8	B	311	319	Right-handed alpha
Helix 54	AF9	B	322	324	Right-handed 310
Helix 55	AG1	B	325	346	Right-handed alpha
Helix 56	AG2	B	374	376	Right-handed 310
Helix 57	AG3	B	404	413	Right-handed alpha
Helix 58	AG4	B	427	429	Right-handed 310
Helix 59	AG5	B	430	434	Right-handed 310
Helix 60	AG6	B	457	463	Right-handed 310
Helix 61	AG7	B	481	485	Right-handed 310
Helix 62	AG8	B	508	516	Right-handed alpha
Helix 63	AG9	B	531	535	Right-handed 310
Helix 64	AH1	B	685	689	Right-handed 310
Helix 65	AH2	B	691	698	Right-handed alpha
Helix 66	AH3	B	708	712	Right-handed 310
Helix 67	AH4	B	717	722	Right-handed alpha
Helix 68	AH5	B	723	725	Right-handed 310
Helix 69	AH6	B	731	744	Right-handed alpha
Helix 70	AH7	B	744	753	Right-handed alpha
Helix 71	AH8	B	774	778	Right-handed 310
Helix 72	AH9	B	806	810	Right-handed 310
Helix 73	AI1	B	836	839	Right-handed 310
Helix 74	AI2	B	840	848	Right-handed alpha
Helix 75	AI3	B	851	860	Right-handed alpha
Helix 76	AI4	B	870	879	Right-handed alpha

There are 18 sheets in PDB entry 8C3P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	303	308	first strand
Strand 2	A	166	171	parallel
Strand 3	A	353	358	parallel
Strand 4	A	488	491	anti-parallel
Strand 5	A	197	198	anti-parallel
Strand 6	A	499	500	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	504	505	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	235	first strand
Strand 2	A	240	242	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	363	364	first strand
Strand 2	A	473	474	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	370	372	first strand
Strand 2	A	453	455	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	386	first strand
Strand 2	A	390	395	anti-parallel
Strand 3	A	444	448	anti-parallel
Strand 4	A	421	425	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	628	629	first strand
Strand 2	A	861	862	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	635	639	first strand
Strand 2	A	644	648	anti-parallel
Strand 3	A	653	661	anti-parallel
Strand 4	A	756	763	anti-parallel
Strand 5	A	792	800	anti-parallel
Strand 6	A	814	822	anti-parallel
Strand 7	A	849	850	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	705	first strand
Strand 2	A	727	730	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	303	308	first strand
Strand 2	B	166	171	parallel
Strand 3	B	353	358	parallel
Strand 4	B	488	491	anti-parallel
Strand 5	B	197	198	anti-parallel
Strand 6	B	499	500	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	504	505	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	233	235	first strand
Strand 2	B	240	242	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	363	364	first strand
Strand 2	B	473	474	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	370	372	first strand
Strand 2	B	453	455	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	383	386	first strand
Strand 2	B	390	395	anti-parallel
Strand 3	B	444	448	anti-parallel
Strand 4	B	421	425	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	628	629	first strand
Strand 2	B	861	862	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	635	639	first strand
Strand 2	B	644	648	anti-parallel
Strand 3	B	653	661	anti-parallel
Strand 4	B	756	763	anti-parallel
Strand 5	B	792	800	anti-parallel
Strand 6	B	814	822	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	702	705	first strand
Strand 2	B	727	730	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C3P

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C3P