Analysis of interatomic Contacts of Structural Units in PDB entry:
8C3V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C3V entry

There are 8 chains in PDB entry 8C3V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLN 1	LYS 227
L	ASP 1	GLU 212
R	HIS 329	CYS 525
I	GLN 1	SER 124
X	HIS 329	CYS 525
J	GLN 1	SER 124
Y	HIS 329	CYS 525
K	GLN 1	VAL 5

There are 59 helices in PDB entry 8C3V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	28	32	Right-handed 310
Helix 2	AA2	H	53	57	Right-handed 310
Helix 3	AA3	H	64	67	Right-handed 310
Helix 4	AA4	H	89	93	Right-handed 310
Helix 5	AA5	H	169	171	Right-handed 310
Helix 6	AA6	H	200	202	Right-handed 310
Helix 7	AA7	H	214	217	Right-handed 310
Helix 8	AA8	L	120	125	Right-handed alpha
Helix 9	AA9	L	182	186	Right-handed alpha
Helix 10	AB1	R	337	343	Right-handed alpha
Helix 11	AB2	R	349	353	Right-handed 310
Helix 12	AB3	R	364	370	Right-handed alpha
Helix 13	AB4	R	383	390	Right-handed 310
Helix 14	AB5	R	405	410	Right-handed 310
Helix 15	AB6	R	416	422	Right-handed alpha
Helix 16	AB7	R	438	443	Right-handed alpha
Helix 17	AB8	R	502	505	Right-handed 310
Helix 18	AB9	I	62	65	Right-handed 310
Helix 19	AC1	I	87	91	Right-handed 310
Helix 20	AC2	I	107	111	Right-handed 310
Helix 21	AC3	X	337	343	Right-handed alpha
Helix 22	AC4	X	349	353	Right-handed 310
Helix 23	AC5	X	364	370	Right-handed alpha
Helix 24	AC6	X	384	390	Right-handed 310
Helix 25	AC7	X	405	410	Right-handed 310
Helix 26	AC8	X	416	422	Right-handed alpha
Helix 27	AC9	X	438	443	Right-handed alpha
Helix 28	AD1	X	502	505	Right-handed 310
Helix 29	AD2	J	62	65	Right-handed 310
Helix 30	AD3	J	87	91	Right-handed 310
Helix 31	AD4	J	107	111	Right-handed 310
Helix 32	AD5	Y	337	343	Right-handed alpha
Helix 33	AD6	Y	349	353	Right-handed 310
Helix 34	AD7	Y	364	370	Right-handed alpha
Helix 35	AD8	Y	384	390	Right-handed 310
Helix 36	AD9	Y	405	410	Right-handed 310
Helix 37	AE1	Y	416	422	Right-handed alpha
Helix 38	AE2	Y	438	443	Right-handed alpha
Helix 39	AE3	Y	502	505	Right-handed 310
Helix 40	AE4	K	62	65	Right-handed 310
Helix 41	AE5	K	87	91	Right-handed 310
Helix 42	AE6	K	107	111	Right-handed 310
Helix 43	AE7	A	28	32	Right-handed 310
Helix 44	AE8	A	53	57	Right-handed 310
Helix 45	AE9	A	64	67	Right-handed 310
Helix 46	AF1	A	89	93	Right-handed 310
Helix 47	AF2	A	169	171	Right-handed 310
Helix 48	AF3	A	200	202	Right-handed 310
Helix 49	AF4	A	214	217	Right-handed 310
Helix 50	AF5	B	120	125	Right-handed alpha
Helix 51	AF6	B	182	186	Right-handed alpha
Helix 52	AF7	C	28	32	Right-handed 310
Helix 53	AF8	C	53	57	Right-handed 310
Helix 54	AF9	C	89	93	Right-handed 310
Helix 55	AG1	C	169	171	Right-handed 310
Helix 56	AG2	C	200	202	Right-handed 310
Helix 57	AG3	C	214	217	Right-handed 310
Helix 58	AG4	D	120	125	Right-handed alpha
Helix 59	AG5	D	182	186	Right-handed alpha

There are 51 sheets in PDB entry 8C3V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	80	85	anti-parallel
Strand 4	H	70	75	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	120	124	parallel
Strand 3	H	94	104	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	60	62	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	11	12	first strand
Strand 2	H	120	124	parallel
Strand 3	H	94	104	anti-parallel
Strand 4	H	107	116	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	137	first strand
Strand 2	H	148	158	anti-parallel
Strand 3	H	189	198	anti-parallel
Strand 4	H	176	178	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	133	137	first strand
Strand 2	H	148	158	anti-parallel
Strand 3	H	189	198	anti-parallel
Strand 4	H	182	183	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	164	167	first strand
Strand 2	H	207	213	anti-parallel
Strand 3	H	218	224	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	70	75	anti-parallel
Strand 4	L	62	67	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	101	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	33	38	anti-parallel
Strand 5	L	44	49	anti-parallel
Strand 6	L	53	54	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	101	106	parallel
Strand 3	L	84	90	anti-parallel
Strand 4	L	96	97	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	113	117	first strand
Strand 2	L	128	138	anti-parallel
Strand 3	L	172	181	anti-parallel
Strand 4	L	158	162	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	152	153	first strand
Strand 2	L	144	149	anti-parallel
Strand 3	L	190	196	anti-parallel
Strand 4	L	204	209	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	354	357	first strand
Strand 2	R	392	403	anti-parallel
Strand 3	R	507	517	anti-parallel
Strand 4	R	431	437	anti-parallel
Strand 5	R	376	380	anti-parallel
Strand 6	I	102	105	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	452	454	first strand
Strand 2	R	492	494	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	473	474	first strand
Strand 2	R	488	489	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	3	7	first strand
Strand 2	I	18	25	anti-parallel
Strand 3	I	78	83	anti-parallel
Strand 4	I	68	73	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	118	122	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	33	39	anti-parallel
Strand 5	I	46	52	anti-parallel
Strand 6	I	57	60	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	12	first strand
Strand 2	I	118	122	parallel
Strand 3	I	92	99	anti-parallel
Strand 4	I	113	114	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	354	357	first strand
Strand 2	X	392	403	anti-parallel
Strand 3	X	507	517	anti-parallel
Strand 4	X	431	437	anti-parallel
Strand 5	X	376	380	anti-parallel
Strand 6	J	102	105	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	452	454	first strand
Strand 2	X	492	494	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	473	474	first strand
Strand 2	X	488	489	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	7	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	118	122	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	33	39	anti-parallel
Strand 5	J	46	52	anti-parallel
Strand 6	J	57	60	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	118	122	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	113	114	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	354	358	first strand
Strand 2	Y	392	403	anti-parallel
Strand 3	Y	507	517	anti-parallel
Strand 4	Y	431	437	anti-parallel
Strand 5	Y	376	380	anti-parallel
Strand 6	K	102	104	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	452	454	first strand
Strand 2	Y	492	494	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	473	474	first strand
Strand 2	Y	488	489	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	3	7	first strand
Strand 2	K	18	25	anti-parallel
Strand 3	K	78	83	anti-parallel
Strand 4	K	68	73	anti-parallel

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There are 6 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	118	122	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	33	39	anti-parallel
Strand 5	K	45	52	anti-parallel
Strand 6	K	57	60	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	10	12	first strand
Strand 2	K	118	122	parallel
Strand 3	K	92	99	anti-parallel
Strand 4	K	113	114	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	A	18	25	anti-parallel
Strand 3	A	80	85	anti-parallel
Strand 4	A	70	75	anti-parallel

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There are 6 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	120	124	parallel
Strand 3	A	94	104	anti-parallel
Strand 4	A	34	39	anti-parallel
Strand 5	A	45	51	anti-parallel
Strand 6	A	60	62	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	12	first strand
Strand 2	A	120	124	parallel
Strand 3	A	94	104	anti-parallel
Strand 4	A	107	116	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	137	first strand
Strand 2	A	148	158	anti-parallel
Strand 3	A	189	198	anti-parallel
Strand 4	A	176	178	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	133	137	first strand
Strand 2	A	148	158	anti-parallel
Strand 3	A	189	198	anti-parallel
Strand 4	A	182	183	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	167	first strand
Strand 2	A	207	213	anti-parallel
Strand 3	A	218	224	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	70	75	anti-parallel
Strand 4	B	62	67	anti-parallel

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There are 6 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	101	105	parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	33	38	anti-parallel
Strand 5	B	45	49	anti-parallel
Strand 6	B	53	54	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	13	first strand
Strand 2	B	101	105	parallel
Strand 3	B	85	90	anti-parallel
Strand 4	B	96	97	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	117	first strand
Strand 2	B	128	138	anti-parallel
Strand 3	B	172	181	anti-parallel
Strand 4	B	158	162	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	154	first strand
Strand 2	B	144	149	anti-parallel
Strand 3	B	190	196	anti-parallel
Strand 4	B	204	209	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	80	85	anti-parallel
Strand 4	C	70	75	anti-parallel

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There are 6 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	120	124	parallel
Strand 3	C	94	104	anti-parallel
Strand 4	C	34	39	anti-parallel
Strand 5	C	45	51	anti-parallel
Strand 6	C	60	62	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	12	first strand
Strand 2	C	120	124	parallel
Strand 3	C	94	104	anti-parallel
Strand 4	C	107	116	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	137	first strand
Strand 2	C	148	158	anti-parallel
Strand 3	C	189	198	anti-parallel
Strand 4	C	176	178	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	133	137	first strand
Strand 2	C	148	158	anti-parallel
Strand 3	C	189	198	anti-parallel
Strand 4	C	182	183	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	167	first strand
Strand 2	C	208	213	anti-parallel
Strand 3	C	218	223	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	70	75	anti-parallel
Strand 4	D	62	67	anti-parallel

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There are 6 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	101	105	parallel
Strand 3	D	85	90	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	45	49	anti-parallel
Strand 6	D	53	54	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	101	105	parallel
Strand 3	D	85	90	anti-parallel
Strand 4	D	96	97	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	117	first strand
Strand 2	D	128	138	anti-parallel
Strand 3	D	172	181	anti-parallel
Strand 4	D	158	162	anti-parallel

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There are 4 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	152	154	first strand
Strand 2	D	144	149	anti-parallel
Strand 3	D	190	196	anti-parallel
Strand 4	D	204	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C3V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C3V