Analysis of interatomic Contacts of Structural Units in PDB entry:
8C3Y


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C3Y entry

There is 1 chain in PDB entry 8C3Y (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 8GLN 1168
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8C3Y. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 42Right-handed alpha
Helix 2
AA2
A
91 97Right-handed 310
Helix 3
AA3
A
129 134Right-handed alpha
Helix 4
AA4
A
137 142Right-handed alpha
Helix 5
AA5
A
150 172Right-handed alpha
Helix 6
AA6
A
179 197Right-handed alpha
Helix 7
AA7
A
212 227Right-handed alpha
Helix 8
AA8
A
227 232Right-handed alpha
Helix 9
AA9
A
235 256Right-handed alpha
Helix 10
AB1
A
296 324Right-handed alpha
Helix 11
AB2
A
327 330Right-handed 310
Helix 12
AB3
A
356 393Right-handed alpha
Helix 13
AB4
A
413 418Right-handed 310
Helix 14
AB5
A
421 431Right-handed alpha
Helix 15
AB6
A
517 523Right-handed alpha
Helix 16
AB7
A
523 528Right-handed alpha
Helix 17
AB8
A
571 593Right-handed alpha
Helix 18
AB9
A
593 598Right-handed alpha
Helix 19
AC1
A
604 631Right-handed alpha
Helix 20
AC2
A
640 644Right-handed 310
Helix 21
AC3
A
648 654Right-handed 310
Helix 22
AC4
A
655 659Right-handed 310
Helix 23
AC5
A
666 686Right-handed alpha
Helix 24
AC6
A
690 713Right-handed alpha
Helix 25
AC7
A
714 719Right-handed 310
Helix 26
AC8
A
743 763Right-handed alpha
Helix 27
AC9
A
764 769Right-handed alpha
Helix 28
AD1
A
844 848Right-handed 310
Helix 29
AD2
A
869 892Right-handed alpha
Helix 30
AD3
A
904 924Right-handed alpha
Helix 31
AD4
A
931 952Right-handed alpha
Helix 32
AD5
A
954 962Right-handed 310
Helix 33
AD6
A
963 967Right-handed 310
Helix 34
AD7
A
971 994Right-handed alpha
Helix 35
AD8
A
1013 1040Right-handed alpha
Helix 36
AD9
A
1058 1097Right-handed alpha
Helix 37
AE1
A
1113 1126Right-handed alpha
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There are 3 sheets in PDB entry 8C3Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
275 276anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 326first strand
Strand 2
A
331 332anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
503 509first strand
Strand 2
A
537 543anti-parallel
Strand 3
A
552 557anti-parallel
Strand 4
A
568 570anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il