Analysis of interatomic Contacts of Structural Units in PDB entry:
8C45

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C45 entry

There are 2 chains in PDB entry 8C45 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ILE 1225
B	THR 3	ILE 1225

There are130 helices in PDB entry 8C45. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	29	Right-handed alpha
Helix 2	AA2	A	59	64	Right-handed alpha
Helix 3	AA3	A	64	73	Right-handed alpha
Helix 4	AA4	A	76	101	Right-handed alpha
Helix 5	AA5	A	120	124	Right-handed 310
Helix 6	AA6	A	125	134	Right-handed alpha
Helix 7	AA7	A	137	146	Right-handed alpha
Helix 8	AA8	A	150	166	Right-handed alpha
Helix 9	AA9	A	179	184	Right-handed alpha
Helix 10	AB1	A	195	202	Right-handed alpha
Helix 11	AB2	A	204	209	Right-handed 310
Helix 12	AB3	A	211	222	Right-handed alpha
Helix 13	AB4	A	222	230	Right-handed alpha
Helix 14	AB5	A	238	243	Right-handed alpha
Helix 15	AB6	A	248	258	Right-handed alpha
Helix 16	AB7	A	259	268	Right-handed alpha
Helix 17	AB8	A	272	277	Right-handed alpha
Helix 18	AB9	A	287	296	Right-handed alpha
Helix 19	AC1	A	303	307	Right-handed 310
Helix 20	AC2	A	317	335	Right-handed alpha
Helix 21	AC3	A	340	349	Right-handed alpha
Helix 22	AC4	A	356	373	Right-handed alpha
Helix 23	AC5	A	397	406	Right-handed alpha
Helix 24	AC6	A	433	444	Right-handed alpha
Helix 25	AC7	A	446	451	Right-handed alpha
Helix 26	AC8	A	452	454	Right-handed 310
Helix 27	AC9	A	457	459	Right-handed 310
Helix 28	AD1	A	460	478	Right-handed alpha
Helix 29	AD2	A	479	501	Right-handed alpha
Helix 30	AD3	A	519	530	Right-handed alpha
Helix 31	AD4	A	531	534	Right-handed 310
Helix 32	AD5	A	536	547	Right-handed alpha
Helix 33	AD6	A	562	565	Right-handed 310
Helix 34	AD7	A	566	568	Right-handed 310
Helix 35	AD8	A	569	580	Right-handed alpha
Helix 36	AD9	A	627	637	Right-handed alpha
Helix 37	AE1	A	648	653	Right-handed 310
Helix 38	AE2	A	666	671	Right-handed alpha
Helix 39	AE3	A	676	680	Right-handed alpha
Helix 40	AE4	A	690	694	Right-handed alpha
Helix 41	AE5	A	699	701	Right-handed 310
Helix 42	AE6	A	702	706	Right-handed 310
Helix 43	AE7	A	747	749	Right-handed 310
Helix 44	AE8	A	750	756	Right-handed alpha
Helix 45	AE9	A	769	773	Right-handed 310
Helix 46	AF1	A	810	821	Right-handed alpha
Helix 47	AF2	A	825	834	Right-handed alpha
Helix 48	AF3	A	843	846	Right-handed 310
Helix 49	AF4	A	853	872	Right-handed alpha
Helix 50	AF5	A	883	888	Right-handed 310
Helix 51	AF6	A	893	927	Right-handed alpha
Helix 52	AF7	A	938	942	Right-handed 310
Helix 53	AF8	A	947	952	Right-handed alpha
Helix 54	AF9	A	958	983	Right-handed alpha
Helix 55	AG1	A	996	1000	Right-handed 310
Helix 56	AG2	A	1001	1008	Right-handed alpha
Helix 57	AG3	A	1033	1047	Right-handed alpha
Helix 58	AG4	A	1050	1063	Right-handed alpha
Helix 59	AG5	A	1074	1086	Right-handed alpha
Helix 60	AG6	A	1086	1095	Right-handed alpha
Helix 61	AG7	A	1124	1133	Right-handed alpha
Helix 62	AG8	A	1133	1153	Right-handed alpha
Helix 63	AG9	A	1159	1190	Right-handed alpha
Helix 64	AH1	A	1195	1198	Right-handed 310
Helix 65	AH2	A	1199	1204	Right-handed alpha
Helix 66	AH3	A	1213	1218	Right-handed alpha
Helix 67	AH4	B	4	28	Right-handed alpha
Helix 68	AH5	B	60	75	Right-handed alpha
Helix 69	AH6	B	76	101	Right-handed alpha
Helix 70	AH7	B	125	134	Right-handed alpha
Helix 71	AH8	B	137	147	Right-handed alpha
Helix 72	AH9	B	154	166	Right-handed alpha
Helix 73	AI1	B	178	184	Right-handed alpha
Helix 74	AI2	B	194	202	Right-handed alpha
Helix 75	AI3	B	204	208	Right-handed 310
Helix 76	AI4	B	211	222	Right-handed alpha
Helix 77	AI5	B	222	230	Right-handed alpha
Helix 78	AI6	B	238	243	Right-handed alpha
Helix 79	AI7	B	248	258	Right-handed alpha
Helix 80	AI8	B	259	268	Right-handed alpha
Helix 81	AI9	B	287	298	Right-handed alpha
Helix 82	AJ1	B	303	307	Right-handed 310
Helix 83	AJ2	B	317	334	Right-handed alpha
Helix 84	AJ3	B	340	349	Right-handed alpha
Helix 85	AJ4	B	356	375	Right-handed alpha
Helix 86	AJ5	B	399	406	Right-handed alpha
Helix 87	AJ6	B	431	442	Right-handed alpha
Helix 88	AJ7	B	446	451	Right-handed alpha
Helix 89	AJ8	B	452	454	Right-handed 310
Helix 90	AJ9	B	457	459	Right-handed 310
Helix 91	AK1	B	460	478	Right-handed alpha
Helix 92	AK2	B	479	501	Right-handed alpha
Helix 93	AK3	B	514	518	Right-handed 310
Helix 94	AK4	B	519	530	Right-handed alpha
Helix 95	AK5	B	536	545	Right-handed alpha
Helix 96	AK6	B	562	565	Right-handed 310
Helix 97	AK7	B	566	568	Right-handed 310
Helix 98	AK8	B	569	580	Right-handed alpha
Helix 99	AK9	B	627	637	Right-handed alpha
Helix 100	AL1	B	646	653	Right-handed 310
Helix 101	AL2	B	663	673	Right-handed alpha
Helix 102	AL3	B	676	680	Right-handed alpha
Helix 103	AL4	B	690	694	Right-handed alpha
Helix 104	AL5	B	699	701	Right-handed 310
Helix 105	AL6	B	702	706	Right-handed 310
Helix 106	AL7	B	746	755	Right-handed alpha
Helix 107	AL8	B	769	773	Right-handed 310
Helix 108	AL9	B	810	821	Right-handed alpha
Helix 109	AM1	B	823	834	Right-handed alpha
Helix 110	AM2	B	843	846	Right-handed 310
Helix 111	AM3	B	853	872	Right-handed alpha
Helix 112	AM4	B	883	887	Right-handed 310
Helix 113	AM5	B	893	927	Right-handed alpha
Helix 114	AM6	B	938	942	Right-handed 310
Helix 115	AM7	B	947	952	Right-handed alpha
Helix 116	AM8	B	958	982	Right-handed alpha
Helix 117	AM9	B	996	1000	Right-handed 310
Helix 118	AN1	B	1001	1007	Right-handed alpha
Helix 119	AN2	B	1033	1047	Right-handed alpha
Helix 120	AN3	B	1050	1064	Right-handed alpha
Helix 121	AN4	B	1074	1086	Right-handed alpha
Helix 122	AN5	B	1086	1095	Right-handed alpha
Helix 123	AN6	B	1124	1133	Right-handed alpha
Helix 124	AN7	B	1133	1153	Right-handed alpha
Helix 125	AN8	B	1154	1155	Right-handed 310
Helix 126	AN9	B	1156	1158	Right-handed 310
Helix 127	AO1	B	1159	1190	Right-handed alpha
Helix 128	AO2	B	1195	1198	Right-handed 310
Helix 129	AO3	B	1199	1206	Right-handed alpha
Helix 130	AO4	B	1213	1219	Right-handed alpha

There are 13 sheets in PDB entry 8C45. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	32	first strand
Strand 2	A	38	39	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	386	389	first strand
Strand 2	A	350	354	parallel
Strand 3	A	309	311	parallel
Strand 4	A	503	508	parallel
Strand 5	A	549	560	parallel
Strand 6	A	602	609	anti-parallel
Strand 7	A	581	590	anti-parallel
Strand 8	A	619	622	parallel
Strand 9	A	641	642	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	674	675	first strand
Strand 2	A	848	849	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	695	697	first strand
Strand 2	A	742	745	anti-parallel
Strand 3	A	724	728	anti-parallel
Strand 4	A	798	799	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	777	780	first strand
Strand 2	A	790	793	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1021	1023	first strand
Strand 2	A	1113	1117	anti-parallel
Strand 3	A	1101	1105	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	32	first strand
Strand 2	B	38	40	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	50	51	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	387	389	first strand
Strand 2	B	350	354	parallel
Strand 3	B	309	311	parallel
Strand 4	B	503	508	parallel
Strand 5	B	549	560	parallel
Strand 6	B	603	609	anti-parallel
Strand 7	B	581	589	anti-parallel
Strand 8	B	619	622	parallel
Strand 9	B	641	642	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	674	675	first strand
Strand 2	B	848	849	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	681	683	first strand
Strand 2	B	805	807	anti-parallel
Strand 3	B	777	779	anti-parallel
Strand 4	B	791	793	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	695	697	first strand
Strand 2	B	742	745	anti-parallel
Strand 3	B	724	728	anti-parallel
Strand 4	B	798	799	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1021	1023	first strand
Strand 2	B	1113	1117	anti-parallel
Strand 3	B	1101	1105	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C45

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C45