Analysis of interatomic Contacts of Structural Units in PDB entry:
8C47


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C47 entry

There are 2 chains in PDB entry 8C47 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY 0TYR 150
A
 SER 6PHE 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 8C47. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
2 9Right-handed alpha
Helix 2
AA2
B
11 15Right-handed 310
Helix 3
AA3
B
40 53Right-handed alpha
Helix 4
AA4
B
54 61Right-handed alpha
Helix 5
AA5
B
113 121Right-handed alpha
Helix 6
AA6
B
130 149Right-handed alpha
Helix 7
AA7
A
55 61Right-handed alpha
Helix 8
AA8
A
78 91Right-handed alpha
Helix 9
AA9
A
97 101Right-handed 310
Helix 10
AB1
A
112 126Right-handed alpha
Helix 11
AB2
A
137 145Right-handed alpha
Helix 12
AB3
A
172 175Right-handed 310
Helix 13
AB4
A
181 194Right-handed alpha
Helix 14
AB5
A
195 197Right-handed 310
Helix 15
AB6
A
202 216Right-handed alpha
Helix 16
AB7
A
222 234Right-handed alpha
Helix 17
AB8
A
251 256Right-handed alpha
Helix 18
AB9
A
257 261Right-handed 310
Helix 19
AC1
A
262 267Right-handed 310
Helix 20
AC2
A
273 284Right-handed alpha
Helix 21
AC3
A
286 295Right-handed alpha
Helix 22
AC4
A
301 305Right-handed 310
Helix 23
AC5
A
308 321Right-handed alpha
Helix 24
AC6
A
334 336Right-handed 310
Helix 25
AC7
A
337 347Right-handed alpha
Helix 26
AC8
A
348 349Right-handed 310
Helix 27
AC9
A
350 355Right-handed 310
Helix 28
AD1
A
359 366Right-handed alpha
Helix 29
AD2
A
368 374Right-handed alpha
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There are 7 sheets in PDB entry 8C47. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
30 34first strand
Strand 2
B
19 24anti-parallel
Strand 3
B
100 106anti-parallel
Strand 4
B
90 96anti-parallel
Strand 5
B
81 87anti-parallel
Strand 6
B
67 76anti-parallel
Strand 7
B
62 64anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 32first strand
Strand 2
A
16 21anti-parallel
Strand 3
A
8 12anti-parallel
Strand 4
A
103 107parallel
Strand 5
A
131 136parallel
Strand 6
A
357 358anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
35 38anti-parallel
Strand 3
A
65 68anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
75 76anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
160 166anti-parallel
Strand 3
A
176 178anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 170first strand
Strand 2
A
160 166anti-parallel
Strand 3
A
150 155anti-parallel
Strand 4
A
297 300parallel
Strand 5
A
329 330parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
237 240first strand
Strand 2
A
246 249anti-parallel
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