Analysis of interatomic Contacts of Structural Units in PDB entry:
8C4L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C4L entry

There are 2 chains in PDB entry 8C4L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 4GLU 246
B
 PRO 6ASN 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 8C4L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 32Right-handed 310
Helix 2
AA2
A
81 90Right-handed alpha
Helix 3
AA3
A
122 133Right-handed alpha
Helix 4
AA4
A
147 151Right-handed 310
Helix 5
AA5
A
175 183Right-handed alpha
Helix 6
AA6
A
199 214Right-handed alpha
Helix 7
AA7
A
216 218Right-handed 310
Helix 8
AA8
A
231 246Right-handed alpha
Helix 9
AA9
B
28 32Right-handed 310
Helix 10
AB1
B
81 90Right-handed alpha
Helix 11
AB2
B
122 133Right-handed alpha
Helix 12
AB3
B
147 151Right-handed 310
Helix 13
AB4
B
175 183Right-handed alpha
Helix 14
AB5
B
199 214Right-handed alpha
Helix 15
AB6
B
216 218Right-handed 310
Helix 16
AB7
B
231 248Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 8C4L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 18first strand
Strand 2
A
21 27anti-parallel
Strand 3
A
69 75anti-parallel
Strand 4
A
56 66anti-parallel
Strand 5
A
42 47anti-parallel
Strand 6
A
95 99anti-parallel
Strand 7
A
7 18anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
159 166first strand
Strand 2
A
138 145parallel
Strand 3
A
113 118parallel
Strand 4
A
191 198parallel
Strand 5
A
220 226parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 18first strand
Strand 2
B
21 27anti-parallel
Strand 3
B
69 75anti-parallel
Strand 4
B
52 66anti-parallel
Strand 5
B
42 49anti-parallel
Strand 6
B
95 99anti-parallel
Strand 7
B
7 18anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
160 166first strand
Strand 2
B
139 145parallel
Strand 3
B
113 118parallel
Strand 4
B
191 198parallel
Strand 5
B
220 226parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il