Analysis of interatomic Contacts of Structural Units in PDB entry:
8C4S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C4S entry

There is 1 chain in PDB entry 8C4S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 226VAL 1601
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 58 helices in PDB entry 8C4S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
239 252Right-handed alpha
Helix 2
AA2
A
264 282Right-handed alpha
Helix 3
AA3
A
306 323Right-handed alpha
Helix 4
AA4
A
328 343Right-handed alpha
Helix 5
AA5
A
345 354Right-handed alpha
Helix 6
AA6
A
379 391Right-handed alpha
Helix 7
AA7
A
409 428Right-handed alpha
Helix 8
AA8
A
450 458Right-handed alpha
Helix 9
AA9
A
458 463Right-handed alpha
Helix 10
AB1
A
463 469Right-handed alpha
Helix 11
AB2
A
470 490Right-handed alpha
Helix 12
AB3
A
563 572Right-handed alpha
Helix 13
AB4
A
572 593Right-handed alpha
Helix 14
AB5
A
597 614Right-handed alpha
Helix 15
AB6
A
616 635Right-handed alpha
Helix 16
AB7
A
639 647Right-handed alpha
Helix 17
AB8
A
654 674Right-handed alpha
Helix 18
AB9
A
712 726Right-handed alpha
Helix 19
AC1
A
735 760Right-handed alpha
Helix 20
AC2
A
760 767Right-handed alpha
Helix 21
AC3
A
769 777Right-handed alpha
Helix 22
AC4
A
786 802Right-handed alpha
Helix 23
AC5
A
804 814Right-handed alpha
Helix 24
AC6
A
825 829Right-handed 310
Helix 25
AC7
A
847 859Right-handed alpha
Helix 26
AC8
A
864 872Right-handed alpha
Helix 27
AC9
A
898 917Right-handed alpha
Helix 28
AD1
A
918 920Right-handed 310
Helix 29
AD2
A
932 948Right-handed alpha
Helix 30
AD3
A
982 992Right-handed alpha
Helix 31
AD4
A
999 1012Right-handed alpha
Helix 32
AD5
A
1020 1029Right-handed alpha
Helix 33
AD6
A
1034 1043Right-handed alpha
Helix 34
AD7
A
1061 1084Right-handed alpha
Helix 35
AD8
A
1114 1126Right-handed alpha
Helix 36
AD9
A
1128 1133Right-handed 310
Helix 37
AE1
A
1137 1152Right-handed alpha
Helix 38
AE2
A
1168 1181Right-handed alpha
Helix 39
AE3
A
1184 1195Right-handed alpha
Helix 40
AE4
A
1200 1219Right-handed alpha
Helix 41
AE5
A
1221 1241Right-handed alpha
Helix 42
AE6
A
1249 1253Right-handed 310
Helix 43
AE7
A
1272 1279Right-handed alpha
Helix 44
AE8
A
1282 1298Right-handed alpha
Helix 45
AE9
A
1301 1321Right-handed alpha
Helix 46
AF1
A
1354 1365Right-handed alpha
Helix 47
AF2
A
1366 1371Right-handed alpha
Helix 48
AF3
A
1375 1388Right-handed alpha
Helix 49
AF4
A
1389 1397Right-handed alpha
Helix 50
AF5
A
1407 1412Right-handed alpha
Helix 51
AF6
A
1426 1439Right-handed alpha
Helix 52
AF7
A
1443 1457Right-handed alpha
Helix 53
AF8
A
1463 1471Right-handed alpha
Helix 54
AF9
A
1502 1511Right-handed alpha
Helix 55
AG1
A
1514 1525Right-handed alpha
Helix 56
AG2
A
1530 1545Right-handed alpha
Helix 57
AG3
A
1552 1560Right-handed alpha
Helix 58
AG4
A
1581 1592Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 8C4S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
637 638anti-parallel
Strand 3
A
1163 1166anti-parallel
Strand 4
A
960 971anti-parallel
Strand 5
A
1099 1109anti-parallel
Strand 6
A
1090 1096anti-parallel
Strand 7
A
924 925parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
260 261first strand
Strand 2
A
637 638anti-parallel
Strand 3
A
1163 1166anti-parallel
Strand 4
A
960 971anti-parallel
Strand 5
A
950 952anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 503first strand
Strand 2
A
508 512anti-parallel
Strand 3
A
525 532anti-parallel
Strand 4
A
552 556anti-parallel
Strand 5
A
545 549anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
499 503first strand
Strand 2
A
508 512anti-parallel
Strand 3
A
525 532anti-parallel
Strand 4
A
560 562anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
701 702first strand
Strand 2
A
709 710anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
833 837first strand
Strand 2
A
843 846anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
877 879first strand
Strand 2
A
1014 1017parallel
Strand 3
A
1050 1053anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1415 1419first strand
Strand 2
A
1422 1425anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1474 1479first strand
Strand 2
A
1597 1600anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1485 1489first strand
Strand 2
A
1571 1575anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il