Analysis of interatomic Contacts of Structural Units in PDB entry:
8C4Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C4Z entry

There are 2 chains in PDB entry 8C4Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2PHE 113
B
 PRO -3PHE 278
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 8C4Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 47Right-handed alpha
Helix 2
AA2
A
54 66Right-handed alpha
Helix 3
AA3
A
88 97Right-handed alpha
Helix 4
AA4
B
7 14Right-handed alpha
Helix 5
AA5
B
46 50Right-handed 310
Helix 6
AA6
B
71 82Right-handed alpha
Helix 7
AA7
B
107 121Right-handed alpha
Helix 8
AA8
B
136 149Right-handed alpha
Helix 9
AA9
B
163 165Right-handed 310
Helix 10
AB1
B
222 241Right-handed alpha
Helix 11
AB2
B
245 257Right-handed alpha
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There are 6 sheets in PDB entry 8C4Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 14first strand
Strand 2
A
101 112parallel
Strand 3
B
104 106anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 76first strand
Strand 2
A
82 86anti-parallel
Strand 3
A
21 30anti-parallel
Strand 4
A
101 112anti-parallel
Strand 5
B
131 134anti-parallel
Strand 6
B
167 168anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 3first strand
Strand 2
B
24 26anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 58first strand
Strand 2
B
92 97parallel
Strand 3
B
34 39parallel
Strand 4
B
125 129parallel
Strand 5
B
152 156parallel
Strand 6
B
176 181parallel
Strand 7
B
199 202parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 209first strand
Strand 2
B
217 220anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 259first strand
Strand 2
B
272 273anti-parallel
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