Analysis of interatomic Contacts of Structural Units in PDB entry:
8C51


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C51 entry

There are 2 chains in PDB entry 8C51 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 3SER 493
B
 ASN 3VAL 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8C51. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 8Right-handed alpha
Helix 2
AA2
A
16 21Right-handed alpha
Helix 3
AA3
A
27 29Right-handed 310
Helix 4
AA4
A
41 45Right-handed 310
Helix 5
AA5
A
71 82Right-handed alpha
Helix 6
AA6
A
92 107Right-handed alpha
Helix 7
AA7
A
122 133Right-handed alpha
Helix 8
AA8
A
143 145Right-handed 310
Helix 9
AA9
A
155 160Right-handed alpha
Helix 10
AB1
A
168 172Right-handed 310
Helix 11
AB2
A
177 179Right-handed 310
Helix 12
AB3
A
187 199Right-handed alpha
Helix 13
AB4
A
218 227Right-handed alpha
Helix 14
AB5
A
249 261Right-handed alpha
Helix 15
AB6
A
274 288Right-handed alpha
Helix 16
AB7
A
300 311Right-handed alpha
Helix 17
AB8
A
336 351Right-handed alpha
Helix 18
AB9
A
363 373Right-handed alpha
Helix 19
AC1
A
446 466Right-handed alpha
Helix 20
AC2
A
469 479Right-handed alpha
Helix 21
AC3
B
4 8Right-handed alpha
Helix 22
AC4
B
16 21Right-handed alpha
Helix 23
AC5
B
27 29Right-handed 310
Helix 24
AC6
B
41 45Right-handed 310
Helix 25
AC7
B
71 82Right-handed alpha
Helix 26
AC8
B
92 107Right-handed alpha
Helix 27
AC9
B
122 133Right-handed alpha
Helix 28
AD1
B
143 145Right-handed 310
Helix 29
AD2
B
155 159Right-handed 310
Helix 30
AD3
B
168 172Right-handed 310
Helix 31
AD4
B
177 179Right-handed 310
Helix 32
AD5
B
187 199Right-handed alpha
Helix 33
AD6
B
218 227Right-handed alpha
Helix 34
AD7
B
249 261Right-handed alpha
Helix 35
AD8
B
274 288Right-handed alpha
Helix 36
AD9
B
300 311Right-handed alpha
Helix 37
AE1
B
336 351Right-handed alpha
Helix 38
AE2
B
363 373Right-handed alpha
Helix 39
AE3
B
381 385Right-handed 310
Helix 40
AE4
B
446 466Right-handed alpha
Helix 41
AE5
B
469 479Right-handed alpha
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There are 11 sheets in PDB entry 8C51. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 33first strand
Strand 2
A
484 486anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
56 57anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
84 87parallel
Strand 3
A
241 244parallel
Strand 4
A
264 267parallel
Strand 5
A
292 298parallel
Strand 6
A
314 317parallel
Strand 7
A
355 358parallel
Strand 8
A
377 380parallel
Strand 9
A
61 63parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 111first strand
Strand 2
A
212 217anti-parallel
Strand 3
A
202 206anti-parallel
Strand 4
A
182 183parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
138 141parallel
Strand 3
A
150 154anti-parallel
Strand 4
A
174 175anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
393 397first strand
Strand 2
A
400 404anti-parallel
Strand 3
A
441 442anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 33first strand
Strand 2
B
484 486anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
56 57anti-parallel
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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
84 87parallel
Strand 3
B
241 244parallel
Strand 4
B
264 267parallel
Strand 5
B
292 298parallel
Strand 6
B
314 317parallel
Strand 7
B
355 358parallel
Strand 8
B
377 380parallel
Strand 9
B
61 63parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
116 117first strand
Strand 2
B
138 141parallel
Strand 3
B
150 154anti-parallel
Strand 4
B
174 175anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
182 183first strand
Strand 2
B
202 206parallel
Strand 3
B
212 217anti-parallel
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