Analysis of interatomic Contacts of Structural Units in PDB entry:
8C53

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C53 entry

There are 2 chains in PDB entry 8C53 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 3	SER 493
B	ASN 3	SER 493

There are 44 helices in PDB entry 8C53. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	8	Right-handed alpha
Helix 2	AA2	A	16	21	Right-handed alpha
Helix 3	AA3	A	27	29	Right-handed 310
Helix 4	AA4	A	41	45	Right-handed 310
Helix 5	AA5	A	71	81	Right-handed alpha
Helix 6	AA6	A	92	105	Right-handed alpha
Helix 7	AA7	A	122	134	Right-handed alpha
Helix 8	AA8	A	143	145	Right-handed 310
Helix 9	AA9	A	155	160	Right-handed alpha
Helix 10	AB1	A	168	172	Right-handed 310
Helix 11	AB2	A	177	179	Right-handed 310
Helix 12	AB3	A	187	199	Right-handed alpha
Helix 13	AB4	A	218	227	Right-handed alpha
Helix 14	AB5	A	249	261	Right-handed alpha
Helix 15	AB6	A	274	288	Right-handed alpha
Helix 16	AB7	A	300	311	Right-handed alpha
Helix 17	AB8	A	336	351	Right-handed alpha
Helix 18	AB9	A	363	373	Right-handed alpha
Helix 19	AC1	A	381	385	Right-handed 310
Helix 20	AC2	A	446	466	Right-handed alpha
Helix 21	AC3	A	469	479	Right-handed alpha
Helix 22	AC4	A	489	493	Right-handed 310
Helix 23	AC5	B	4	8	Right-handed alpha
Helix 24	AC6	B	16	21	Right-handed alpha
Helix 25	AC7	B	27	29	Right-handed 310
Helix 26	AC8	B	41	45	Right-handed 310
Helix 27	AC9	B	71	82	Right-handed alpha
Helix 28	AD1	B	92	105	Right-handed alpha
Helix 29	AD2	B	122	134	Right-handed alpha
Helix 30	AD3	B	143	145	Right-handed 310
Helix 31	AD4	B	155	160	Right-handed alpha
Helix 32	AD5	B	168	172	Right-handed 310
Helix 33	AD6	B	177	179	Right-handed 310
Helix 34	AD7	B	187	199	Right-handed alpha
Helix 35	AD8	B	218	227	Right-handed alpha
Helix 36	AD9	B	249	261	Right-handed alpha
Helix 37	AE1	B	274	288	Right-handed alpha
Helix 38	AE2	B	300	311	Right-handed alpha
Helix 39	AE3	B	336	351	Right-handed alpha
Helix 40	AE4	B	363	373	Right-handed alpha
Helix 41	AE5	B	381	385	Right-handed 310
Helix 42	AE6	B	446	466	Right-handed alpha
Helix 43	AE7	B	469	479	Right-handed alpha
Helix 44	AE8	B	489	493	Right-handed 310

There are 12 sheets in PDB entry 8C53. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	484	486	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	49	50	first strand
Strand 2	A	56	57	anti-parallel

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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	63	first strand
Strand 2	A	84	87	parallel
Strand 3	A	241	244	parallel
Strand 4	A	264	267	parallel
Strand 5	A	292	298	parallel
Strand 6	A	314	317	parallel
Strand 7	A	355	358	parallel
Strand 8	A	377	380	parallel
Strand 9	A	61	63	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	138	141	parallel
Strand 3	A	150	154	anti-parallel
Strand 4	A	174	175	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	202	206	parallel
Strand 3	A	212	217	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	393	397	first strand
Strand 2	A	400	404	anti-parallel
Strand 3	A	441	442	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	33	first strand
Strand 2	B	484	486	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	49	50	first strand
Strand 2	B	56	57	anti-parallel

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There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	61	63	first strand
Strand 2	B	84	87	parallel
Strand 3	B	241	244	parallel
Strand 4	B	264	267	parallel
Strand 5	B	292	298	parallel
Strand 6	B	314	317	parallel
Strand 7	B	355	357	parallel
Strand 8	B	377	380	parallel
Strand 9	B	61	63	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	117	first strand
Strand 2	B	138	141	parallel
Strand 3	B	150	154	anti-parallel
Strand 4	B	174	175	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	183	first strand
Strand 2	B	202	206	parallel
Strand 3	B	212	217	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	395	first strand
Strand 2	B	402	403	anti-parallel
Strand 3	B	441	442	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C53

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C53