Analysis of interatomic Contacts of Structural Units in PDB entry:
8C59


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C59 entry

There are 5 chains in PDB entry 8C59 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 7ASN 393
B
 C 1 G 7
B
 G 9 A 14
C
 G 1 G 6
C
 G 8 G 14
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 8C59. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 35Right-handed alpha
Helix 2
AA2
A
47 59Right-handed alpha
Helix 3
AA3
A
85 93Right-handed alpha
Helix 4
AA4
A
95 109Right-handed alpha
Helix 5
AA5
A
113 117Right-handed 310
Helix 6
AA6
A
134 139Right-handed 310
Helix 7
AA7
A
155 172Right-handed alpha
Helix 8
AA8
A
173 177Right-handed 310
Helix 9
AA9
A
188 191Right-handed 310
Helix 10
AB1
A
194 208Right-handed alpha
Helix 11
AB2
A
220 222Right-handed 310
Helix 12
AB3
A
238 245Right-handed alpha
Helix 13
AB4
A
250 254Right-handed 310
Helix 14
AB5
A
260 264Right-handed 310
Helix 15
AB6
A
302 305Right-handed 310
Helix 16
AB7
A
322 326Right-handed 310
Helix 17
AB8
A
339 347Right-handed alpha
Helix 18
AB9
A
350 360Right-handed alpha
Helix 19
AC1
A
364 374Right-handed alpha
Helix 20
AC2
A
377 386Right-handed alpha
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There are 2 sheets in PDB entry 8C59. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 44first strand
Strand 2
A
9 16parallel
Strand 3
A
128 131parallel
Strand 4
A
180 186parallel
Strand 5
A
229 237anti-parallel
Strand 6
A
210 218anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 286first strand
Strand 2
A
292 295anti-parallel
Strand 3
A
307 310anti-parallel
Strand 4
A
328 331parallel
Strand 5
A
334 337anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il