Analysis of interatomic Contacts of Structural Units in PDB entry:
8C5L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8C5L entry

There are 4 chains in PDB entry 8C5L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2GLY 568
B
 GLY 1GLY 568
C
 ASP 1LYS 18
D
 ASP 1LYS 18
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 8C5L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 33Right-handed alpha
Helix 2
AA2
A
43 53Right-handed alpha
Helix 3
AA3
A
67 74Right-handed alpha
Helix 4
AA4
A
83 88Right-handed alpha
Helix 5
AA5
A
91 98Right-handed alpha
Helix 6
AA6
A
129 131Right-handed 310
Helix 7
AA7
A
132 142Right-handed alpha
Helix 8
AA8
A
154 165Right-handed alpha
Helix 9
AA9
A
186 202Right-handed alpha
Helix 10
AB1
A
210 220Right-handed alpha
Helix 11
AB2
A
229 231Right-handed 310
Helix 12
AB3
A
232 239Right-handed alpha
Helix 13
AB4
A
273 284Right-handed alpha
Helix 14
AB5
A
287 298Right-handed alpha
Helix 15
AB6
A
305 313Right-handed alpha
Helix 16
AB7
A
315 328Right-handed alpha
Helix 17
AB8
A
336 354Right-handed alpha
Helix 18
AB9
A
357 395Right-handed alpha
Helix 19
AC1
A
402 425Right-handed alpha
Helix 20
AC2
A
450 471Right-handed alpha
Helix 21
AC3
A
473 486Right-handed alpha
Helix 22
AC4
A
495 518Right-handed alpha
Helix 23
AC5
A
523 530Right-handed alpha
Helix 24
AC6
A
531 538Right-handed alpha
Helix 25
AC7
A
539 548Right-handed alpha
Helix 26
AC8
A
548 553Right-handed alpha
Helix 27
AC9
A
556 568Right-handed alpha
Helix 28
AD1
B
17 33Right-handed alpha
Helix 29
AD2
B
43 53Right-handed alpha
Helix 30
AD3
B
67 74Right-handed alpha
Helix 31
AD4
B
83 88Right-handed alpha
Helix 32
AD5
B
91 98Right-handed alpha
Helix 33
AD6
B
129 131Right-handed 310
Helix 34
AD7
B
132 142Right-handed alpha
Helix 35
AD8
B
154 165Right-handed alpha
Helix 36
AD9
B
186 202Right-handed alpha
Helix 37
AE1
B
210 220Right-handed alpha
Helix 38
AE2
B
229 231Right-handed 310
Helix 39
AE3
B
232 239Right-handed alpha
Helix 40
AE4
B
273 284Right-handed alpha
Helix 41
AE5
B
287 298Right-handed alpha
Helix 42
AE6
B
305 313Right-handed alpha
Helix 43
AE7
B
315 328Right-handed alpha
Helix 44
AE8
B
336 354Right-handed alpha
Helix 45
AE9
B
357 370Right-handed alpha
Helix 46
AF1
B
374 395Right-handed alpha
Helix 47
AF2
B
402 425Right-handed alpha
Helix 48
AF3
B
449 471Right-handed alpha
Helix 49
AF4
B
473 486Right-handed alpha
Helix 50
AF5
B
495 518Right-handed alpha
Helix 51
AF6
B
523 530Right-handed alpha
Helix 52
AF7
B
531 538Right-handed alpha
Helix 53
AF8
B
539 548Right-handed alpha
Helix 54
AF9
B
548 553Right-handed alpha
Helix 55
AG1
B
556 568Right-handed alpha
Helix 56
AG2
C
2 17Right-handed alpha
Helix 57
AG3
D
2 18Right-handed alpha
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There are 10 sheets in PDB entry 8C5L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 39first strand
Strand 2
A
7 11parallel
Strand 3
A
60 64parallel
Strand 4
A
259 268anti-parallel
Strand 5
A
107 112anti-parallel
Strand 6
A
302 303anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
259 268anti-parallel
Strand 3
A
329 330parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
103 104anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
146 148first strand
Strand 2
A
223 228parallel
Strand 3
A
115 119anti-parallel
Strand 4
A
243 246anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 172first strand
Strand 2
A
177 183anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
35 39first strand
Strand 2
B
7 11parallel
Strand 3
B
60 64parallel
Strand 4
B
259 268anti-parallel
Strand 5
B
107 112anti-parallel
Strand 6
B
302 303anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 78first strand
Strand 2
B
259 268anti-parallel
Strand 3
B
329 330parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
99 100first strand
Strand 2
B
103 104anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
146 148first strand
Strand 2
B
223 228parallel
Strand 3
B
115 119anti-parallel
Strand 4
B
243 246anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
170 172first strand
Strand 2
B
177 182anti-parallel
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