Analysis of interatomic Contacts of Structural Units in PDB entry:
8C5V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8C5V entry

There are 20 chains in PDB entry 8C5V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 257	GLN 647
B	ARG 257	GLN 647
C	MET 1	LYS 131
D	MET 1	LYS 131
E	SER 15	ALA 157
F	SER 15	ALA 157
G	SER 15	ALA 157
H	SER 15	ALA 157
I	MET 1	ARG 516
J	MET 1	ARG 516
K	MET 1	ARG 516
L	MET 1	ARG 516
M	MET 1	ARG 516
N	MET 1	ARG 516
O	MET 1	ARG 516
P	MET 1	ARG 516
Q	MET 1	ARG 516
R	MET 1	ARG 516
S	MET 1	ARG 516
T	MET 1	ARG 516

There are157 helices in PDB entry 8C5V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	268	292	Right-handed alpha
Helix 2	AA2	A	293	295	Right-handed 310
Helix 3	AA3	A	300	325	Right-handed alpha
Helix 4	AA4	A	331	334	Right-handed 310
Helix 5	AA5	A	335	348	Right-handed alpha
Helix 6	AA6	A	364	368	Right-handed alpha
Helix 7	AA7	A	370	384	Right-handed alpha
Helix 8	AA8	A	388	395	Right-handed alpha
Helix 9	AA9	A	427	437	Right-handed alpha
Helix 10	AB1	A	446	451	Right-handed alpha
Helix 11	AB2	A	452	454	Right-handed 310
Helix 12	AB3	A	466	470	Right-handed 310
Helix 13	AB4	A	474	485	Right-handed alpha
Helix 14	AB5	A	563	568	Right-handed alpha
Helix 15	AB6	A	609	613	Right-handed 310
Helix 16	AB7	A	636	647	Right-handed alpha
Helix 17	AB8	B	268	295	Right-handed alpha
Helix 18	AB9	B	300	325	Right-handed alpha
Helix 19	AC1	B	329	334	Right-handed alpha
Helix 20	AC2	B	335	348	Right-handed alpha
Helix 21	AC3	B	364	382	Right-handed alpha
Helix 22	AC4	B	388	395	Right-handed alpha
Helix 23	AC5	B	427	437	Right-handed alpha
Helix 24	AC6	B	446	451	Right-handed alpha
Helix 25	AC7	B	452	454	Right-handed 310
Helix 26	AC8	B	474	486	Right-handed alpha
Helix 27	AC9	B	564	569	Right-handed alpha
Helix 28	AD1	B	609	613	Right-handed 310
Helix 29	AD2	B	636	647	Right-handed alpha
Helix 30	AD3	C	5	30	Right-handed alpha
Helix 31	AD4	C	36	55	Right-handed alpha
Helix 32	AD5	C	56	58	Right-handed 310
Helix 33	AD6	C	60	78	Right-handed alpha
Helix 34	AD7	C	84	107	Right-handed alpha
Helix 35	AD8	C	112	131	Right-handed alpha
Helix 36	AD9	D	4	30	Right-handed alpha
Helix 37	AE1	D	36	57	Right-handed alpha
Helix 38	AE2	D	59	78	Right-handed alpha
Helix 39	AE3	D	84	107	Right-handed alpha
Helix 40	AE4	D	112	130	Right-handed alpha
Helix 41	AE5	E	71	75	Right-handed alpha
Helix 42	AE6	E	146	152	Right-handed alpha
Helix 43	AE7	F	146	151	Right-handed alpha
Helix 44	AE8	F	152	157	Right-handed 310
Helix 45	AE9	G	71	75	Right-handed alpha
Helix 46	AF1	G	124	131	Right-handed 310
Helix 47	AF2	G	146	151	Right-handed alpha
Helix 48	AF3	H	71	75	Right-handed alpha
Helix 49	AF4	H	125	130	Right-handed 310
Helix 50	AF5	H	146	152	Right-handed alpha
Helix 51	AF6	I	6	80	Right-handed alpha
Helix 52	AF7	I	86	111	Right-handed alpha
Helix 53	AF8	I	118	146	Right-handed alpha
Helix 54	AF9	I	147	154	Right-handed alpha
Helix 55	AG1	I	155	216	Right-handed alpha
Helix 56	AG2	I	218	234	Right-handed alpha
Helix 57	AG3	I	247	389	Right-handed alpha
Helix 58	AG4	I	390	392	Right-handed 310
Helix 59	AG5	I	393	513	Right-handed alpha
Helix 60	AG6	J	6	80	Right-handed alpha
Helix 61	AG7	J	86	111	Right-handed alpha
Helix 62	AG8	J	118	146	Right-handed alpha
Helix 63	AG9	J	147	152	Right-handed alpha
Helix 64	AH1	J	155	217	Right-handed alpha
Helix 65	AH2	J	218	234	Right-handed alpha
Helix 66	AH3	J	247	388	Right-handed alpha
Helix 67	AH4	J	389	392	Right-handed 310
Helix 68	AH5	J	393	515	Right-handed alpha
Helix 69	AH6	K	6	80	Right-handed alpha
Helix 70	AH7	K	86	111	Right-handed alpha
Helix 71	AH8	K	118	145	Right-handed alpha
Helix 72	AH9	K	147	152	Right-handed alpha
Helix 73	AI1	K	155	216	Right-handed alpha
Helix 74	AI2	K	218	234	Right-handed alpha
Helix 75	AI3	K	247	390	Right-handed alpha
Helix 76	AI4	K	393	513	Right-handed alpha
Helix 77	AI5	L	6	80	Right-handed alpha
Helix 78	AI6	L	86	110	Right-handed alpha
Helix 79	AI7	L	118	146	Right-handed alpha
Helix 80	AI8	L	147	153	Right-handed alpha
Helix 81	AI9	L	155	217	Right-handed alpha
Helix 82	AJ1	L	218	234	Right-handed alpha
Helix 83	AJ2	L	247	390	Right-handed alpha
Helix 84	AJ3	L	393	512	Right-handed alpha
Helix 85	AJ4	L	513	515	Right-handed 310
Helix 86	AJ5	M	1	5	Right-handed 310
Helix 87	AJ6	M	6	80	Right-handed alpha
Helix 88	AJ7	M	86	111	Right-handed alpha
Helix 89	AJ8	M	118	145	Right-handed alpha
Helix 90	AJ9	M	147	154	Right-handed alpha
Helix 91	AK1	M	155	215	Right-handed alpha
Helix 92	AK2	M	219	235	Right-handed alpha
Helix 93	AK3	M	247	390	Right-handed alpha
Helix 94	AK4	M	393	514	Right-handed alpha
Helix 95	AK5	N	6	80	Right-handed alpha
Helix 96	AK6	N	86	111	Right-handed alpha
Helix 97	AK7	N	118	146	Right-handed alpha
Helix 98	AK8	N	147	153	Right-handed alpha
Helix 99	AK9	N	155	216	Right-handed alpha
Helix 100	AL1	N	218	235	Right-handed alpha
Helix 101	AL2	N	247	387	Right-handed alpha
Helix 102	AL3	N	393	512	Right-handed alpha
Helix 103	AL4	N	513	515	Right-handed 310
Helix 104	AL5	O	1	5	Right-handed 310
Helix 105	AL6	O	6	80	Right-handed alpha
Helix 106	AL7	O	86	111	Right-handed alpha
Helix 107	AL8	O	118	145	Right-handed alpha
Helix 108	AL9	O	147	153	Right-handed alpha
Helix 109	AM1	O	155	218	Right-handed alpha
Helix 110	AM2	O	218	235	Right-handed alpha
Helix 111	AM3	O	247	389	Right-handed alpha
Helix 112	AM4	O	390	392	Right-handed 310
Helix 113	AM5	O	393	514	Right-handed alpha
Helix 114	AM6	P	6	80	Right-handed alpha
Helix 115	AM7	P	86	111	Right-handed alpha
Helix 116	AM8	P	118	146	Right-handed alpha
Helix 117	AM9	P	148	153	Right-handed alpha
Helix 118	AN1	P	155	216	Right-handed alpha
Helix 119	AN2	P	219	235	Right-handed alpha
Helix 120	AN3	P	247	390	Right-handed alpha
Helix 121	AN4	P	393	514	Right-handed alpha
Helix 122	AN5	Q	1	5	Right-handed 310
Helix 123	AN6	Q	6	80	Right-handed alpha
Helix 124	AN7	Q	86	111	Right-handed alpha
Helix 125	AN8	Q	118	145	Right-handed alpha
Helix 126	AN9	Q	147	153	Right-handed alpha
Helix 127	AO1	Q	155	217	Right-handed alpha
Helix 128	AO2	Q	218	235	Right-handed alpha
Helix 129	AO3	Q	247	390	Right-handed alpha
Helix 130	AO4	Q	393	514	Right-handed alpha
Helix 131	AO5	R	6	80	Right-handed alpha
Helix 132	AO6	R	86	111	Right-handed alpha
Helix 133	AO7	R	118	145	Right-handed alpha
Helix 134	AO8	R	147	152	Right-handed alpha
Helix 135	AO9	R	155	218	Right-handed alpha
Helix 136	AP1	R	218	235	Right-handed alpha
Helix 137	AP2	R	247	389	Right-handed alpha
Helix 138	AP3	R	390	392	Right-handed 310
Helix 139	AP4	R	393	514	Right-handed alpha
Helix 140	AP5	S	1	5	Right-handed 310
Helix 141	AP6	S	6	80	Right-handed alpha
Helix 142	AP7	S	86	111	Right-handed alpha
Helix 143	AP8	S	118	146	Right-handed alpha
Helix 144	AP9	S	147	152	Right-handed alpha
Helix 145	AQ1	S	155	216	Right-handed alpha
Helix 146	AQ2	S	218	235	Right-handed alpha
Helix 147	AQ3	S	247	389	Right-handed alpha
Helix 148	AQ4	S	392	514	Right-handed alpha
Helix 149	AQ5	T	1	5	Right-handed 310
Helix 150	AQ6	T	6	80	Right-handed alpha
Helix 151	AQ7	T	86	109	Right-handed alpha
Helix 152	AQ8	T	118	145	Right-handed alpha
Helix 153	AQ9	T	147	152	Right-handed alpha
Helix 154	AR1	T	155	217	Right-handed alpha
Helix 155	AR2	T	218	235	Right-handed alpha
Helix 156	AR3	T	247	390	Right-handed alpha
Helix 157	AR4	T	393	514	Right-handed alpha

There are 21 sheets in PDB entry 8C5V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	263	267	first strand
Strand 2	B	263	267	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	328	first strand
Strand 2	A	361	363	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	355	first strand
Strand 2	A	403	409	parallel
Strand 3	A	413	420	anti-parallel
Strand 4	A	498	506	anti-parallel
Strand 5	A	488	494	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	598	606	first strand
Strand 2	A	511	518	anti-parallel
Strand 3	A	523	527	anti-parallel
Strand 4	A	631	634	parallel
Strand 5	A	622	625	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	531	535	first strand
Strand 2	A	581	586	anti-parallel
Strand 3	A	591	592	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	531	535	first strand
Strand 2	A	581	586	anti-parallel
Strand 3	A	595	596	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	543	544	first strand
Strand 2	A	550	553	anti-parallel
Strand 3	A	558	561	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	328	first strand
Strand 2	B	361	363	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	355	first strand
Strand 2	B	403	410	parallel
Strand 3	B	413	419	anti-parallel
Strand 4	B	501	506	anti-parallel
Strand 5	B	489	491	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	598	606	first strand
Strand 2	B	511	519	anti-parallel
Strand 3	B	522	527	anti-parallel
Strand 4	B	631	635	parallel
Strand 5	B	620	625	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	533	535	first strand
Strand 2	B	581	586	anti-parallel
Strand 3	B	591	596	anti-parallel
Strand 4	B	557	563	parallel
Strand 5	B	549	554	anti-parallel
Strand 6	B	542	545	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	105	first strand
Strand 2	E	17	24	anti-parallel
Strand 3	E	109	111	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	104	105	first strand
Strand 2	E	17	24	anti-parallel
Strand 3	E	27	32	anti-parallel
Strand 4	E	140	145	parallel
Strand 5	E	131	137	anti-parallel
Strand 6	E	116	117	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	41	first strand
Strand 2	E	87	91	anti-parallel
Strand 3	E	99	102	anti-parallel
Strand 4	E	64	70	parallel
Strand 5	E	55	61	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	104	109	first strand
Strand 2	F	19	23	anti-parallel
Strand 3	F	28	32	anti-parallel
Strand 4	F	140	145	parallel
Strand 5	F	131	137	anti-parallel
Strand 6	F	116	117	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	41	first strand
Strand 2	F	87	91	anti-parallel
Strand 3	F	100	102	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	46	47	first strand
Strand 2	F	55	60	anti-parallel
Strand 3	F	65	69	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	104	111	first strand
Strand 2	G	17	23	anti-parallel
Strand 3	G	28	32	anti-parallel
Strand 4	G	143	144	parallel
Strand 5	G	133	134	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	36	41	first strand
Strand 2	G	87	92	anti-parallel
Strand 3	G	97	102	anti-parallel
Strand 4	G	64	70	parallel
Strand 5	G	55	61	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	104	111	first strand
Strand 2	H	17	23	anti-parallel
Strand 3	H	28	32	anti-parallel
Strand 4	H	143	144	parallel
Strand 5	H	133	135	anti-parallel
Strand 6	H	116	117	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	38	41	first strand
Strand 2	H	87	90	anti-parallel
Strand 3	H	99	102	anti-parallel
Strand 4	H	64	70	parallel
Strand 5	H	57	61	anti-parallel
Strand 6	H	46	47	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8C5V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8C5V